| RF00001: 5S_rRNA (2728) | RF00002: 5_8S_rRNA (451) | RF00003: U1 (309) | RF00004: U2 (139) |
| RF00005: tRNA (7640) | RF00007: U12 (1) | RF00010: RNaseP_bact_a (1) | RF00012: U3 (1) |
| RF00015: U4 (17) | RF00016: SNORD14 (96) | RF00020: U5 (92) | RF00022: GcvB (1) |
| RF00026: U6 (286) | RF00028: Intron_gpI (49) | RF00029: Intron_gpII (937) | RF00030: RNase_MRP (3) |
| RF00032: Histone3 (158) | RF00033: MicF (1) | RF00035: OxyS (1) | RF00046: snoR30 (14) |
| RF00049: SNORD36 (172) | RF00050: FMN (1) | RF00054: SNORD25 (19) | RF00055: SNORD96 (31) |
| RF00057: RyhB (1) | RF00059: TPP (2) | RF00069: SNORD24 (63) | RF00073: mir-156 (2) |
| RF00075: mir-166 (7) | RF00077: SraB (1) | RF00078: MicA (1) | RF00079: OmrA-B (2) |
| RF00082: SraG (1) | RF00083: GlmZ_SraJ (1) | RF00084: CsrC (1) | RF00093: SNORD18 (14) |
| RF00097: snoR71 (52) | RF00103: mir-1 (2) | RF00104: mir-10 (1) | RF00113: SIB_RNA (1) |
| RF00114: S15 (1) | RF00117: C0719 (1) | RF00122: GadY (1) | RF00127: t44 (1) |
| RF00132: snoR24 (38) | RF00133: SNORD33 (28) | RF00134: snoZ196 (15) | RF00135: snoZ223 (23) |
| RF00140: Alpha_RBS (1) | RF00145: snoZ105 (6) | RF00147: SNORD34 (4) | RF00149: snoZ103 (250) |
| RF00160: snoZ159 (10) | RF00168: Lysine (1) | RF00174: Cobalamin (2) | RF00177: SSU_rRNA_bacteria (571) |
| RF00200: snoZ199 (4) | RF00201: snoZ278 (43) | RF00202: snoR66 (3) | RF00203: snoR160 (7) |
| RF00204: snoR12 (12) | RF00205: snoR41 (19) | RF00206: U54 (6) | RF00213: snoR38 (7) |
| RF00240: RNA-OUT (1) | RF00247: mir-160 (5) | RF00251: mir-219 (1) | RF00267: snoR64 (21) |
| RF00268: snoZ7 (1) | RF00296: snoR16 (16) | RF00300: snoZ221_snoR21b (9) | RF00303: snoR86 (32) |
| RF00304: snoZ279_R105_R108 (26) | RF00309: snosnR60_Z15 (12) | RF00315: snoJ33 (4) | RF00321: snoZ247 (7) |
| RF00326: snoZ155 (9) | RF00328: snoZ161_228 (5) | RF00329: snoZ162 (2) | RF00330: snoZ43 (26) |
| RF00332: snoZ266 (27) | RF00333: snoZ157 (7) | RF00337: snoZ112 (13) | RF00339: snoR60 (3) |
| RF00343: snoZ122 (2) | RF00345: snoR1 (9) | RF00349: snoR11 (17) | RF00350: snoZ152 (10) |
| RF00352: snoR21 (1) | RF00353: snoR31_Z110_Z27 (15) | RF00355: snoR28 (1) | RF00357: snoR44_J54 (82) |
| RF00358: snoZ101 (12) | RF00359: snoZ102_R77 (16) | RF00360: snoZ107_R87 (8) | RF00369: sroC (1) |
| RF00382: DnaX (1) | RF00383: IS1222_FSE (2) | RF00391: RtT (1) | RF00445: mir-399 (3) |
| RF00451: mir-395 (9) | RF00452: mir-172 (4) | RF00482: snoF1_F2 (5) | RF00506: Thr_leader (1) |
| RF00512: Leu_leader (1) | RF00534: SgrS (1) | RF00548: U11 (1) | RF00619: U6atac (15) |
| RF00630: P26 (1) | RF00638: MIR159 (3) | RF00640: MIR167_1 (12) | RF00643: MIR171_1 (10) |
| RF00645: MIR169_2 (9) | RF00647: MIR164 (9) | RF00648: MIR396 (1) | RF00677: MIR168 (3) |
| RF00688: MIR394 (1) | RF00689: MIR390 (1) | RF00692: MIR171_2 (1) | RF00695: MIR398 (3) |
| RF00704: MIR397 (2) | RF00761: mir-340 (1) | RF00764: mir-191 (5) | RF00782: MIR480 (11) |
| RF00865: MIR169_5 (7) | RF00882: MIR811 (7) | RF01056: Mg_sensor (1) | RF01068: mini-ykkC (1) |
| RF01170: snoU61 (11) | RF01179: snoU83 (3) | RF01193: snoR20a (4) | RF01198: snoR69Y (4) |
| RF01204: snR65 (6) | RF01206: snoR109 (6) | RF01208: snoR99 (1) | RF01213: snoR103 (9) |
| RF01215: snoR97 (35) | RF01219: snoR100 (6) | RF01220: snoR104 (2) | RF01224: snoR80 (5) |
| RF01227: snoR83 (12) | RF01228: snoR111 (8) | RF01230: snoR77 (13) | RF01231: snoR74 (12) |
| RF01236: snoU19 (2) | RF01279: snoR53Y (5) | RF01280: snoR14 (45) | RF01281: snoR35 (1) |
| RF01283: snoU30 (7) | RF01284: snoR8a (13) | RF01285: snoU31b (25) | RF01286: snoR26 (5) |
| RF01287: snoR27 (3) | RF01288: snoR31 (3) | RF01292: snoR2 (23) | RF01300: snoU49 (5) |
| RF01302: snoU36a (11) | RF01338: CRISPR-DR25 (2) | RF01381: HIV-1_SL3 (8) | RF01382: HIV-1_SL4 (1) |
| RF01400: istR (1) | RF01408: sraL (1) | RF01419: IsrR (82) | RF01420: snoR113 (5) |
| RF01421: snoR114 (1) | RF01423: snoR117 (2) | RF01424: snoR118 (3) | RF01426: snoR126 (20) |
| RF01427: snoR127 (1) | RF01428: snoR128 (16) | RF01430: snoR134 (3) | RF01431: snoR135 (34) |
| RF01432: snoR143 (19) | RF01433: snoR137 (31) | RF01497: ALIL (1) | RF01689: AdoCbl-variant (1) |
| RF01707: JUMPstart (1) | RF01766: cspA (1) | RF01769: greA (1) | RF01770: rimP (1) |
| RF01771: rnk_leader (1) | RF01784: bablM (1) | RF01794: sok (1) | RF01813: rdlD (1) |
| RF01832: ROSE_2 (1) | RF01845: enod40 (1) | RF01847: Plant_U3 (88) | RF01852: tRNA-Sec (1) |
| RF01855: Plant_SRP (115) | RF01856: Protozoa_SRP (1) | RF01959: SSU_rRNA_archaea (7) | RF01960: SSU_rRNA_eukarya (576) |
| RF01988: SECIS_2 (1) | RF01989: SECIS_3 (1) | RF02001: group-II-D1D4-3 (1) | RF02030: tp2 (1) |
| RF02031: tpke11 (1) | RF02035: IMES-2 (3) | RF02051: STnc450 (1) | RF02052: STnc630 (1) |
| RF02053: STnc430 (1) | RF02057: STnc40 (1) | RF02060: STnc410 (1) | RF02069: STnc70 (1) |
| RF02111: IS009 (2) | RF02253: IRE_II (3) | RF02401: ClpQY_promoter (1) | RF02410: snoR136 (5) |
| RF02411: snoR138 (2) | RF02413: snoR145 (1) | RF02514: 5_ureB_sRNA (1) | RF02516: mir-393 (4) |
| RF02539: SNOR75 (23) | RF02540: LSU_rRNA_archaea (44) | RF02541: LSU_rRNA_bacteria (692) | RF02542: SSU_rRNA_microsporidia (5) |
| RF02543: LSU_rRNA_eukarya (688) | RF02564: naRNA4 (40) | RF02674: AsdA (1) | RF02744: Rev39_5p_UTR (1) |
| RF02750: ES003 (1) | RF02751: ES036 (4) | RF02754: ES205 (1) | RF02755: ES222 (1) |
| RF02756: ES239 (1) | RF02773: TrxA_thermometer (1) | RF02782: CpoB_ybgF_thermometer (1) |