result

Gene information

Detail information of AfisC1G00162

Location

Gene	Chr	Start	End	Strand
AfisC1G00162	chr1	22221745	22226180	+

Sequences

CDS

Protein

Gene

>AfisC1G00162
ATGACTTTACACCGTGAAAAATTACTCCTTTTCACAATTCTAATATCAATACTTTTTTCCTTCTCAGTCGGTAGAAGCACCATAACTCCTTCCACCCCATTAGCCGACAATGAAACTCTAGTCTCTGATTCTGGCTCTTTCTGTCTTGGTTTTTTCAGTCCAAACCCAAAAAGTCGATACATTGGTCTATGGTATAACAAAATATCCGACAAAACAAAATTATGGGTTGTAAATCGGGCAAACCCGTTATCAAACTCACCCGGAGTCTTATCCATCACAGCAGACGGAACACTCACCATCGCCGACAAAGACTCGAGGGTAGTTTGGTCATCAAACACGACAACAAAGCTAAGCAATCCTGTAGCTCAACTTCTAGACAGTGGAAATCTTGTAGTCAAAGAACTTAAAGATGACACCTCAAATTATGCATGGCAAGGCTTTGACTACCCAACCGATACTCTGCTGGCTGATATGAAGTTTGGGGTAGATTTTATTACAGGTGTGAACCGTACCATAACTGCATGGAGAAGTCGTAGTGACCCTACCCCAGGGGAGTATATATCATATATGGACACTAGGGGAGTCCCTGAAATGATTCTGGATGATGGTAGAAAGAGAATATTTAGGACAGGACCTTGGGATGGGAACAAGTTTAGTGGCTTACCATATGTGGGGACATTTGATGGCATCAGTTTTACTTTTGCCAGTAATAAGTCAGAGGCGACCTATTCTTTTCATCTTAGTCCATCCATATTGTCAAAATTAGTCATCAGTCCAGCTGGGAATATACAAAGGTTACTTTGGATAAATGATAGCACCTCATGGTATCAATTCTGGGTTAATCCAAGCGACAAGTGCGATCATATAGGGACCTGTGGAAATTATGGCTTATGTGACATGACATGTAATTGTTTGACGGGATTTGTGCCCAAAAATTCAATGAATTGGAATGTATTAAAAGATGGAAGCGATGGATGTATCAGAAAACATGAGTTGGATTGTGCAGGTGGAACCGATGGATTTGCGATTGTAAAAAATGTCAAGGTGCCACAAACTGAAAATTGTATGGTTGATTTGAGTTTGAACCTTGATCAGTGCAAACAATTGTGTTTGAGAAGTTGCAATTGTACTGCGTATGCTAGTGCCGATAGTAGCGATAATAGCGGATGTTGGATTTGGGTTGGGAGTTTGTTTGATATTCGGAGGTTCGAGAATTTCGGTCAGGATTTGTATGTACGTGTTGCTGCGATAGATGTGCCTAAAGGTATGTTGTTGGTGTTGCTTCCCATTTTGACCTCAAAATAGATTTTGAGTATTTTGTAGGATGTGTTACTACCCATTTACATCATTTTTAAAACCGTTTATAAACATAGCCAACTGTTTGTAGCATGGTAAAATGATGCCACTTGTACCGGCATTATTTTGAATAGCGCAAGTGCGTTATGTTTTTAAAACTTTGCACTAACGCTATTTTAAATATCAGCATCACTAGTACAGTTTTTTAAATAGCAAATGTTTAATTTGAAATAACACAGCAAAGATTTTAATTTCGTCCATCTCGCTTGAGATTTTGTCCGAATTTTTTTGCATGGACGAGGCGGAATGTCAAATCTTATTCATATCTCATATGATATTTTTCTCTACTAACATATTAAAATCTCAATCGAAATCTGAACCAAGTTCCTAATTTGAGATCCCAACCCTAATTATATGTTCTTTTTTGTACATTTTTTATTACCTTTTAAGTAGGTCCAAATAAAATTATCCAGCCAATTATTATTTAATTATTCTTTTAATCATTTTTTTGGATAAATCACAACAAATGATTTCGTTTTTTTTCTTTCTAATGTGATTCTTCGGTTACTACCGGATTAATTAAGCTAGTACTCTCCTTCAAAAAAAGAAATTTTAATCTTCTCTTTTTAGTGCATCTACTATCTCTATGTAATTGAGTATGTTATAATTTTTATTTTTTTGGATAACAACCATTAAATGTTAAATTCTAAACTCATAAGTTACTATGAGATTGTCAGGAAATGTACTTTAAGATCTGATATATCAACCAGAGATGTACACCTAAGATGCACTAACACCATTTGAGATATCATCTGATATGCTTTTTGTGAGATGAGATGTAATCAAAATATGGGATTTGAAACTTTAATACTAAGTGGACCGTATGTGTGTATAATATATTTTACATTATCATTCAACTTTAATAACTTATAAAAAGTAGACCAGAAAAAATTCTTATTTTATAAGATTGTGTTTAAATTTACAGATAAAATAGATTACTTAGTTAGGACTAATCAATGTTGGCTGGGAATTAAAGTTTGACAATTGCGGATGTTTACAATGTAATTTCTACTTGATAGTTTGACAAGTATGACATTATATTTGTAAATGTTAAAGTTCAAAATGATATTTCTTGTCATTTAATCAAAAAATATGTGCACATTGCTCAAATTTAACTGGTATCAATGTGCATTTAAAGCTGTATAATAAAATGGATTTATTTTTTCATTTTAAAATACTTGGTTTTACAATGCTAAACTAAGCAATTGATGCAGATTAACATGAATATATTTGATCTCCATCAATTCATCAGTTGTGAACAAGTGCATACTTGATTAGATATGAAGTGAGTGTATAAATTTGTTCCAAAGTTGATTAACAGCAGCTTTTATTATTACGTCTTTGTGCTTATGAATTTCAAACCATGATATGAAAGTCATAATTCGTGAGACGTACTAAAAGCAACTAACTTGTCTCAATTTGCTAGGTGAAAGATCACATGGTGGAGAAGTAGTCACTATAGTGGCCAGTCTAGTGGCTGCAATTTTGCTGCTAGGTTGTGCAGGTTGTTGCATATGGCGAAGGAAGAAGAGAAAACGTAAGATAACACAAGAAATTGTGATGGCATATATGAAGCTTAGATTCTACAGTAACATTTTCTAAATTCATTTCCTTTATCCAGAATTTTTGGATGCAAATCACGAACAAAAAAGTGAAGCAGTTGATCTTCCAATATTCGATTTTGAGACAATTGCCACAGCAACAGACTCCTTCTCATCTGCTAATAAACTTGGAGAAGGTGGTTTCGGTCCTGTTTACAAGGTTAGCATCTTGTGTTAAGCATTGCGCATTGTTTGTGTATGTAAATCAAATCATATATCTATAAAATATTGATTTTTTTACTCATCATTTAAACCGCTTATGATTTTGGCAAATTTTTATACTAATTACAAATATAGTCCACTTTCTGCCAGCATGGCAAAAAAGGACTAACTGTGTTGATGCTATTCAAGATATCGACAAACACCGGTATTGCAAACATAGTTCGAGCTATTTCAAATAGTGCTATTGCAATTTTTTGGAAAAGAAATATTTATACTATTGATATTTGAACTGGCGTGGTGCAAATAAAATAACCATCTTCTATAATGCTAACAAAAGGTGGAATATATTTGTAATATGCTTTAGAACATGGTTAAATTTTGTAACTATTGAAAATAATGACCAAAATGATAAGATATTCTTGTATATTAAAGTAGAAAGTTGTGCTCTATCAAAAATCAAAACCGAATGTAAACAAACAGGGTAAACTTGGAGATGATCAAGAAATAGCAGTAAAGAGGCTCTCGAAAACATCGGACCAAGGTATAGAAGAGTTCAAAAATGAGGTTATGCTTATTGCAAAGCTTCAACATAGAAACCTCGTTCGGCTTCTTGGTTGTTGCATTCAAGGAGAAGAAAGAATGTTGATATATGAATACATGCCCAACAATAGTTTGGATGCATTCTTATTCAGTAAGTTTTCATCTCTTTTGAGTGCATATTAACAAGTTTCTGTTGATCTTGAATTTCTTTTTCCCATTTTAAACATATTTGGCAACTATTTATAAGTACTCAAAAATCCTTATAAGTTACTTATCAATGCTACATGTTTGAAAACAACTTATAATGAGGGAAAGTAAGTTAACTAAAAGTAACAAGTCATAAACAAGTACATACTTATGACATATTTTGTATTTCTCAACCACATTATATCAAAGTTTCAAAACACTTTTACTTTTTATTATTTACTTAGAACTACTCAAAAGTTACAATGAAAAATTACATTTGAGCAGTTGCAACAAAAAAAAAGGTCCCAAACAAACTCTTCGTGGAAATTTGAAACTTCGATTTTGCATTCAGATGAAGAGAAAAAGTTATTGCTGGATTGGAATTCTCGATACCAAATCATTATTGGGATTGCTCGAGGTCTTCTTTATCTTCACCAAGATTCCAGATTCAGAATCATCCATAGAGATCTTAAAGCTGGAAATATTCTTCTTGATACAGAAATGAAGCCTAAAATCTCTGATTTTGGCATGGCAAGAATCTTTAGTGGCGATGAAACAGATTACAATACCAAAAAAGTTGTCGGAACATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256477.1	3.0e-222	receptor-like serine/threonine-protein kinase SD1-8
Swissprot	O81905.1	2.4e-176	S-domain-1 (SD1) receptor kinase 8
trEMBL	A0A5P1F8I1	2.2e-222	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G21380.1	48.07	5e-176	614	ARK3;RK3	receptor kinase 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G00162	AT4G21380.1	672	308	13	19	654	25	691	48.07	5e-176	614
AfisC1G00162	AT4G27290.1	660	319	10	9	654	6	630	44.24	2e-166	582
AfisC1G00162	AT1G65800.1	672	321	15	19	654	23	688	45.98	5e-162	568

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01453.21	B_lectin	Domain	72	177	98.4	2e-28
PF00954.17	S_locus_glycop	Domain	208	312	91.7	3.6e-26
PF08276.8	PAN_2	Domain	334	400	68.5	3.5e-19
PF07714.14	Pkinase_Tyr	Domain	492	648	126.9	7.5e-37

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005773	C	vacuole
GO:0004674	F	protein serine/threonine kinase activity
GO:0005634	C	nucleus
GO:0009506	C	plasmodesma
GO:0009875	P	pollen-pistil interaction
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0031625	F	ubiquitin protein ligase binding
GO:0032497	P	detection of lipopolysaccharide
GO:0046777	P	protein autophosphorylation
GO:0052033	P	pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response
GO:0071215	P	cellular response to abscisic acid stimulus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network