result

Gene information

Detail information of AfisC1G00195

Location

Gene	Chr	Start	End	Strand
AfisC1G00195	chr1	27513658	27517867	-

Sequences

CDS

Protein

Gene

>AfisC1G00195
ATGACATATCACCAAAATATACCTGCCATATTCACCACAATACTCCTCCTCGCCTCCTCCTCAATTGCTAGGTACACCCTCACTCCCACCACCCCTTTACATGACAACGAAACCCTCATCTCCTCTTCTGGTACCTTTGCTCTTGGGTTCTTTAACCCCAATCCAAAAAACAGTTACGTGGGGCTATGGTATAATCAAATACCTGAAAAAACAGTAGTATGGGTCGCAAACCGGGTAAACCCAATAGTAAACTTGCCAGGAGTTTTATCCATCACTGCCAACGGTACCCTTACAATCACTGACAAAAATTTACTAGTTGTTTGGTCATCAAATGCGTCAACCATACTAACCGACCCGATAGCTCAACTTCTAGACAATGGTAACCTTGTAGTCAAAGAATTAAACGATGATGATGCATCAAATTATGCATGGCAAGGTTTCAACTACTTAACCGACACAGTCTTAGCGGGCATGAAAGTGGGCATGGATTTCGCCACAGGCTTGAACCATACATTGACCTCCTGGTCTAGTTCTACTGACCCAACCCCTGGACCGTTTCATCTATCTGTAGAAATACGAGGAGATCCCGAATTCTTCCTTGCAAATGGCATGAGTCGAATATGGAGGACCGGACCCTTTGATGGGTCCCATTTAAGCGGGATTCCCACCATGTTGACGTGCAAGCATTTCAACTTTAGTGTTGTAAACAATAAGTCGGGAGTGATGTTCTCCTATCAGGTCGAACCATCCATTTTATCGAGACTATTCGTGAATTCTACTGGAAGTTACCAACATGCTGTTTGGGTAAAAGATAGAGAACAATGGAATTACTACTGGACTGTGCCGAAGGAAGCATGCGATCAGATCGGTACATGTGGGAATTATGGTTTGTGCGACATGGACAACACTCCGATGTGCAGTTGCTTAACAGGTTTTGAGCCCAAGAACTCGTTTAACTGGAACACTTTGAGGGATGGAAGTGATGGATGTGTTAGGAAACACAAGTTGGATTGTGAGAACGGAACAGATGGGTTTGTGGTTGTGAAAAATGTGAAGCTGCCGCAGAGTGAAGATTGTGTGGTTGATTTTAGTTTGAGTCTTGATGAGTGCAGGAGTTTTTGTTTGAGGAACTGCTCTTGTACTGCTTATGCTAGTGCGATTGCCAGTAATGGTAGCGGGTGTGTGATATGGATTGGGAGATTGTTTGATTTGAGGAATTATAATAGTTTGTTTGGACAAGATTTATATGTGCGCCTGAATGCTACCGATGTGCCTAAAGGTATGTAATTAAATACTCTCTTCTCTTGTAAATCAAATTGTCTTGATCACCTCCTTAATTATCGAAATTGACAAAAACTTGTTAAACAAGGAAAAACGTGATGAAAATAGGCGACACGTGTATGAAAAGGGGATTCTCTTCCCCTCTTTCGTAAGAAGAACAATATACTTGATCATGGATCCGTGTCATAGGTCATTTAGATCGGATCATGTTATATCTTTAATTTTCACATCTTTCTTCATGATTAACGTTGTTTAATTCACATAGACATGTTTTGATTACATACATGTATTGATAATTATATTCATTTAATCGTTTGATCATTGCATTCATAATCTCACAATGCAATCGTTCATGGATGTGAAAAATTACGGTCGATGGAATCATAAGCCAAAAGTTTGGTGTTCCCACTAAGATACAGTTTTCGTCCTAATCAAAAGAAGATGCCTACAAGAAAGACACATATGGAAACATGGTGGAGTCGTTGTGGCTGTTTTATCGTAAATCTCATGTAAAAGGTTGAATTCACAGGTTCGCCAGGTGGCAAATCTCATGGTGGAGTCGTTGTGGCTGTTATCGTCATTAGTCTAGTTGCTGGAGTTTTGCTTATAAGTTTTGTTGGTTGTGCCTTATGCAAAAGGAGGAGGAAGAAGCAGCAAAGAAACAGTAAGATAACGATTTATATTTATTTTAGTGCACTTGCTATATTGTGAAACATTAAATCTGTTAATCGGTTTAAACGTGTGAAGAAATTTCTCTTTTTTTAATACCTTTTCAGTGATCATGAGTGCAATGAACCCTTGCAACAAACAATTTAAACATGAACAAAGAGGCGAATCGATAGATCTTCCAATCTTCGATTTTGATACAATCATAGCAGCAACAGACTATTTCTCATCTGATAATAAACTTGGAGAGGGTGGATTTGGTCCTGTTTATAAGGTTTGTATTTTTCTCTTGTGCATTACTGCTATTTTTTACTTGCAAACTATATGTGATTTATCAAAAAATGTGATGATGTATATATTGATTTGATGCTTAATGGAGAAATCAAACAGGGTCAAATAGGAGATGATCAAGAAATAGCAGTAAAAAGACTCTCGAAAACATCAAGTCAAGGTTCAGAAGAGTTCAAAAATGAAGTTATGCTTATTGCAAAACTTCAACATAGAAACCTTGTTCGCCTTTACGGTTGTTGTATACAAGAAGAAGAGAGATTGCTTATATATGAATACTTGCCCAATAAAAGTTTGGATGCATTCTTATTTGGTAAATTTTCATCTCTTTCAAATGCATGTTATCTTGATCGTGAAATTCTTCTTTCAGTTTCATGCAAATTTGACGCTTACAATTTACATTCAGAGGAAGGAAAAAGGTTGTTGCTGGATTGGAATACACGATACCACATCATTACTGGGATTGCTCGAGGTCTTCTCTATCTTCACCAAGATTCCAGATTTAGAATCATTCATCGTGACCTTAAAGCTGGAAATATTCTTCTTGATAAGGAAATGATTCCAAAAATCTCCGATTTTGGCATGGCAAGAATCTTTAGTGGTGATGAAACTGATTTCAATACCCGAAAAATTGTTGGAACATAGTAAGCATATCAGTTTGTTATTGGCATGCATAAAACTTTTGAGTTTTGATACTTAAAATTAACTTTTACATTGTTTAACATCGCAGTGGATACATGTCTCCTGAGTATGCCATGTATGGAGCATTTTCAGCAAAATCAGATGTATTTAGTTTCGGTGTGTTGGTTCTAGAAATTATAAGTGGAAAAAAGAACAGAGTTTATGCAGAACCGCCTCATATTAATCTACTTGCCCATGTAAGTTTTCAATATTTCATCTTTCATTGCATGTCATAGCATTATGCCTACATTTTAGTGTGTCTGGAGCGCGTGCGCACACACACTGTATGTGTGTATGAGGATAACTAGAGGTTTCATATCCAAGAACTTTGACAACACAACTAAATACTTTTTATGTAAATATTTGCAATTGATGTCCATACTCTACAGATCTTTGGATCAAGATTCCAAATGTCTTGCAACTGTTATAGTGATATTTGACATTTTTAAAATTGATAAATGATGTCCAAAGGTTTCAAAACTGAAAGGTCTGGATCCATAGTCTAAAACCGTAGCACTTTGTTAGTGTTCCTTACTGCACAACCAAATATCTTGCCATTATTACCTTGTTTCATCAACACAATGCATAATTTTCTATTTCAAATATTTTCTGATCAAATAGGCATGGAGTTTATGGAAAGAAGGAAATGGCATGCAATTAGTGGATGATTCAATGGGCGACTCCTTTTCAAGTGATGAAGTTCTAAGGTGTATAAAACTTGGGTTATTATGTGTACAAGAGCATCCAGAAGATAGGCCTCTGATGTCATCAATAGTACAAATGTTCAGTGGTGATATAAAGACAATACCACAGCCAAAGCAACCTGGTTTCACAGGAAGGGTTCATCCTCCTGAAGTGAACTTATCCAGCAATCATGATTTTTGTTCTAATGAACTGAGTATGACAGTGATTGAACCAAGATAGTTGGTTAATGACTTTATATAGAATCTTCATCCTCAGATTTTGGTGGACATAGTTCTGGCTAATAATGTGCTGAGAACTTTTGGTAGTCACATTTTGCTTCCTGAAGAAAGCTATAATAAAAGCATGATGCACCCTAGAGTAGCTGAGTGTGCATTGTATATTTCCGGTCAGCAAAGTAATACCAAACGAAAACATACTCTTTAAAGATGGCAATTAACAAAGTAATAAATTCATTGACGCAGTAAAAAAGGAAGGAGTGAGTAAATTACAATGCATTTTGCCTTGTAGCAATGCCCTTTGATAATGGGTTCAGTAAGATTTGTATGTAGTCGTATCCAGTTTGAATAGAATGGATGTATAGTCAATTTAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256477.1	4.0e-296	receptor-like serine/threonine-protein kinase SD1-8
Swissprot	O81905.1	7.4e-207	S-domain-1 (SD1) receptor kinase 8
trEMBL	A0A5P1F8I1	3.5e-294	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G21380.1	47.19	0.0	735	ARK3;RK3	receptor kinase 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
AfisC1G00195	AT4G21380.1	818	397	14	3	795	8	815	47.19	735
AfisC1G00195	AT1G65800.1	838	401	18	23	825	28	847	45.82	722
AfisC1G00195	AT1G65790.1	834	405	16	21	825	24	843	46.28	714

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01453.21	B_lectin	Domain	70	178	83.8	6.9e-24
PF00954.17	S_locus_glycop	Domain	208	316	102.6	1.5e-29
PF08276.8	PAN_2	Domain	338	404	72.9	1.4e-20
PF07714.14	Pkinase_Tyr	Domain	513	779	168.6	1.4e-49

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0006952	P	defense response
GO:0005773	C	vacuole
GO:0004674	F	protein serine/threonine kinase activity
GO:0005634	C	nucleus
GO:0009506	C	plasmodesma
GO:0009875	P	pollen-pistil interaction
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0031625	F	ubiquitin protein ligase binding
GO:0046777	P	protein autophosphorylation
GO:0071215	P	cellular response to abscisic acid stimulus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network