result

Gene information

Detail information of AfisC1G02680

Location

Gene	Chr	Start	End	Strand
AfisC1G02680	chr1	495529362	495532495	+

Sequences

CDS

Protein

Gene

>AfisC1G02680
ATGAAGATAAGATGTGATTTTTGCAATGAAGAAGCAGCATCGGTGTTTTGTTCTGCAGACGAGGCTGCTCATTGTTCCAGGTGTGATTTTAATGTTCATAGTGCGAATCTACTTTCAAGAAAGCACAAGCGTTTTTCGATTATTAATCCTTCTTCTAATTGTTCTGATTCTCAATCTCCATTTTGTGACATATGCAAGGTTTCCATCTAATTTGCATCTCTTTTAATTTAGTTAGAATTTGTTTTTATCATCTTTAGGCTTGTTTTTTCTTTTTCTTGAGTTTGATTTTCTTTACCTTTCTATCAAACAAATAAATCTTTGGGTGCTATCTTTTCAAGTTATTTCAACAAAAAAATTGATTGAACCTTACCATTGAATTATTAACAGGAAAAGAGGGGATTTTTATTCTGCCTAGAAGATGGAGCGATACCATGCAGAGACTGTGATATGTCAACACACAAAGCAAATGCACACACAATGAAGCACAGTAGATTTTTAATAGGTGGAAACAGGCTTTCCTCAGATCCAATAGCAGAGCCCGAACTAAGGCCCGAAACGTCCAGTGAAAGCAAGCATCACTGTAATTCTGGATTTCGGGTCAAAGATAATAACAACAATAGCAGCATATCTAAGTACTTAATTAGTTATGATAGATAAATTCTGTAAGTCATATTTAATCTGGCAGTGTCGTCCCAATATATATAATCATCAGTTAGTCAAAAAATATTTTGTTAAGCATTTGCATGATTGTACCTTCACCATATTGTCTATTGCTGCTTGTTGATTAGCAAGCTGGTTAAACACGGTTGGCATACGTCATGATTTTGTTTCTAAGACTAACTTTTTTTTCTTGGTCGATCATATGCTTTATGTCGATGTTAACAGGTATTTCAGTGTTTAGATAGCTCCTTGTCTATCACATATAAACACTACTATTTCATCTATTTTTTTAAAACTAATTTATTGAAACTATTATTTTCTTGTTATTTTTGCATTTTTATTTCAACTTCGACTATGAAACATGAATAAACTTCTTAGCAGACTTGTGAATTCGACAGGGAAACTAGCTTTCATTCACTTCTTAGCATTTGACTTCAGTCTCAGGAATGCTCATTCTCCAAAATCATAGATCCATGATTCCAGAGGTGGTTGCATCGATTGATGGGACTAAGAACTTTACTTGTAAGTAAGATGTAATAACAAATTGTAATCTAAATAGGTGAGAAGACATACCGAACAACAAGTTCAGGTGAGAAAGACGATGGTTTCTGTTAAGGTAAAATCACTATAACTAAGGCAACCCACAGTTTGCAAATTTCCCAGTCCATCAAGTTGTTTTCATTGAGTATGTGCTTTGATTTTCTTTCTCTGATGCCACTGTTTGTAAATATTTTTTATTTTTACTTGCATCTCAACATTGATATGTACTTGGCAGGCGCTGGAGGTGGAATATGGATGCTAGCTTTGTTTGAGACCATACACAACAAGAGGCGAGGTAACATTATATGATTGTTTATGTATTTTATATAACATATAGTTTTCAATCTATGATGTTAAATTTTATTTTTACATGATTTTCCTTATATGTCTCTGCTTTCTTAGAATCTCATAGAGCTCAGTTGGAACTGGATTTATAGAAATTACATGAAGGACGGACTGTGATAGAAAGCAAGCTTGAACAAGCTTCGAAAGTGCCAGGTAATTTCCTTCTCTGTTTCTGATTTAAGATTAATAGTTTTGTTGGATTTTATATGCTATTTTATAAATTATGCTAATGAACATCAGGTATGAAAGAAATAATGGCAGGGTTTAAATCACACATTTCATCTCTTTCAAAGGATATGTCTGCCATGCAAAAAGAAATCATTAAATATAAAGCATCAGCCCCAGATTTACATATTCTACGATCTGAAGTACGGTCACTTTCTTGTTTATTAGATAGGAAGGTGAAGTATATCATACTTTGTTGGCATATTTCTTATTATGTATTAGTTTTAAGGCATTGCTTTGTCATCAAGCATACTGTATCATACCTGCAGGTGAGTGAGTCGGATTCATTGTCTAACAAATCCTCATGACAACTTTTAGAGATAAAGAAGCTACAAAAAGATGTACGGTTGCTTTTACTTCAACTTATACTTTTTTCATCATGTTCTGGGAATAGTAATCAGTGTAACAATACCTTAATTTTATTTTCAAAGTACTTAATTGGTTTTGGTCCTGTAATTAGCAGTACAAATATTTTATATTATTTCAGACAGAATTTCGAGCAAACATCATACAGTTCAATATTCTATATGCTTATTACAATCTTTTGTCGTGGAAGTTAAGGGAAGAATAATCTGGTTTGGTTTTACAAATATTTTTTGATAACTTAGAGTGTCAAAACTGATTTCATGTATATTCTTCCACTCTTTGTTTAAGAATCATGGTTATTTACTCACTGTTTTGTTTTTGAGTTTTGCTTTAATCATCTTGTTACCTTTGTCAATGATGCATGTGGATTAGTTTATACTTATTGGCTGGAAAGGGTAGTAACCCTGATTTGATCAAAGGACTTCCAACAAACATGGCTCTTATTCAAGCATGCTTTAGTTTTACTTATAGGATCCAGTTCTTAAATGCAGTTATCAGTTGCACTTTTAAGTAGTTATCGATTTTAAGTTCTTTAACATGTTTCATAACATAGTAGTTTATATATATAAAATCTAGTTTTTAGGCTTCCAAATTCTAGAAGTTGTTCTGATGAAATCCTTATATGCAGTAAAGTTTTGATACTTTCATTTTATTCATGATTTTATAACGGTTATTTTTGCCACACTCAAACTCAGTTCTGCAGCTAAAGAAAAGTTCTTTTGAAAATATATACCCTGTTTTCCAGGTCCAAAGGTTGAGAAAAAGTGACCATGAGTTGAGGCTGTTTATAGAAATGTACAAACGTGAATCAACCAATTCCAGGTATTGCTATCACATTATTTCTGAAATATATAGTTATTTATCCTATACGTTTTGATGAAAAATAATAATTCGATCAAAACTCTCATGAATGGGTTACATTTTGTGGTGTTATTGTTTTGTATGAGACGACAAATGTTTTTATCAGGAAATGTTGGATCGCTGCCTTAGCTCCTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	THU56643.1	1.7e-32	hypothetical protein C4D60_Mb11t19400
Swissprot	Q9LQZ7.1	2.2e-32	Protein SALT TOLERANCE HOMOLOG 2
trEMBL	A0A0D9VIV8	5.1e-34	B-box zinc finger protein 20

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G75540.1	58.56	5e-33	137	AtBBX21;BBX21;LHUS;STH2	salt tolerance homolog2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G02680	AT1G75540.1	111	44	1	1	111	1	109	58.56	5e-33	137
AfisC1G02680	AT4G39070.1	117	50	1	1	117	1	113	53.85	7e-30	127
AfisC1G02680	AT1G06040.2	110	53	1	1	110	1	105	47.27	9e-25	110

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	3	44	25.1	1.3e-05
PF00643.21	zf-B_box	Domain	58	97	26.2	6e-06

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003712	F	transcription cofactor activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006513	P	protein monoubiquitination
GO:0008270	F	zinc ion binding
GO:0009651	P	response to salt stress
GO:0010200	P	response to chitin
GO:0016574	P	histone ubiquitination
GO:0043565	F	sequence-specific DNA binding
GO:0044763	P	single-organism cellular process
GO:0045087	P	innate immune response
GO:0048573	P	photoperiodism, flowering
GO:0080167	P	response to karrikin
GO:0090351	P	seedling development
GO:1900458	P	negative regulation of brassinosteroid mediated signaling pathway
GO:1902448	P	positive regulation of shade avoidance
GO:2000306	P	positive regulation of photomorphogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network