result

Gene information

Detail information of AfisC1G03787

Location

Gene	Chr	Start	End	Strand
AfisC1G03787	chr1	710843119	710844775	-

Sequences

CDS

>AfisC1G03787
ATGGAGTACCAAGCAAATAAAAATGAAAAGCCATGGCTATTGATATTGCTCTTCATCATATCCATATTAGTAAGCATGATGGGCTATCCACTGATGAAGAAGCCAAGCTCAAGCTGGACTGCAAAGGCAGTAAAGGAGGCAGAGGCAGTGGCCGCAATAGACTGCTCCGGGCATGGCAGAGGTTACTTGGACGGAATCGTCGTCGATGGAGCTCCCATGTGCGAGTGCAACACTTGCTACACTGGTCCCCATTGCTCCACTTTGCTCCCTAACTGCTCCTCTGATGTTGTAAGCGGCGATGCTTTTTTTCTCGAAAAATATTGGATGCAACACAAATCCAACGCCGCTCTTGTCATATCCCTGCCATCTTCCGGCAATATCATCAACGCCGAGCTTGAAAAACACGTCAGACTTTTACATCAGGCCGTCGGTAATGCCAAAGCCGATGACAAAAAGCAAACCAAATTCTTTCGTTTTACTGGCTATGAATGGAAAGGGAACGCATCCGATTGCGTTAACGCCGCTTCTCCTCAAAACATCATAGAATTGGTGACTTCGCCCAATAATCCCGAAGGTCGATTTCACCATTCCATTATCAATGGCTCTTTAGCAATCCACGACCACGTCTACTATTGGCCACATTATACCCCAATTGCACAACCCACCGACGAAGATATCATGTTGTTTTCCATGTCCAAATACACTGGAAATTCCGGCAGCAGATTCGGGTGGGCGCTTATAAAGGACGTGAAAGTATACGACAGGGTAATGGAGTACATGACCGAGAACACGGAAGGAACTTCCCACGATACGCAACTTCGAACATTGAAACTAATAAAGGAGATCTTGTTGCAAATGAAAACGAAACGGGAAACAATGGCCGACATCAACCAATTTGGCTATCAAACATTGTCTAAAAGATGGGCTGAACTTACCAAGCTAGTTGCATCTTCAGATCGATTCTCCCTTCAAAACCTCTCTCCGCAATATTGCAACTACTTCAAAAAAGTTAGAGACCCCTCACCATCATTCAGATGGCTAAAGTGTGAATGTGAGGAAGACACGGATTGTGAAGCTCTACTCAGGAATGCTCAAATTAAAACTCAAAGCGGAGTGCTTTTTGAAGCCGATAGTCGTTACACATGCTTGAGTTTAATCAAGACGGAGGACGACTTCGATCAAATAATGGAGAAGTTGAAGCCTCTTGTATCTGCAAAAAGGAGCATTCACCTAATGGAAGGAAGCATGGACTGA

Protein

Gene

>AfisC1G03787
ATGGAGTACCAAGCAAATAAAAATGAAAAGCCATGGCTATTGATATTGCTCTTCATCATATCCATATTAGTAAGCATGATGGGCTATCCACTGATGAAGAAGCCAAGCTCAAGCTGGACTGCAAAGGCAGTAAAGGAGGCAGAGGCAGTGGCCGCAATAGACTGCTCCGGGCATGGCAGAGGTTACTTGGACGGAATCGTCGTCGATGGAGCTCCCATGTGCGAGTGCAACACTTGCTACACTGGTCCCCATTGCTCCACTTTGCTCCCTAACTGCTCCTCTGATGTTGTAAGCGGCGATGCTTTTTTTCTCGAAAAATATTGGATGCAACACAAATCCAACGCCGCTCTTGTCATATCCCTGGTATAGAATGAGCTATTTCTTCCAGCCATCTTCCGGCAATATCATCAACGCCGAGCTTGAAAAACACGTCAGACTTTTACATCAGGCCGTCGGTAATGCCAAAGCCGATGACAAGTACATCGTCTTCGGTATCGGCGTCACTCAACTCCTCAACGGTCTAGTCATCGCCCTTTCCCCAAACGATATATCACCCGATGTGCAACCATCAAAAGTTGTCACCGTCGTCCCTTAATATCCCGTCTTCAGAAAGCAAACCAAATTCTTTCGTTTTACTGGCTATGAATGGAAAGGGAACGCATCCGATTGCGTTAACGCCGCTTCTCCTCAAAACATCATAGAATTGGTGACTTCGCCCAATAATCCCGAAGGTCGATTTCACCATTCCATTATCAATGGCTCTTTAGCAATCCACGACCACGTCTACTATTGGCCACATTATACCCCAATTGCACAACCCACCGACGAAGATATCATGTTGTTTTCCATGTCCAAATACACTGGAAATTCCGGCAGCAGATTCGGGTACGACGGTCTTTTTTATTTTTTCTTCTTCTTAATTAGTAACGTTGACTTTATTTCATATATACCGTCAACGGTGGTCTGCATCATTCATGCATGCTAATTATTAACAAATTACATATTGTATGTACAGGTGGGCGCTTATAAAGGACGTGAAAGTATACGACAGGGTAATGGAGTACATGACCGAGAACACGGAAGGAACTTCCCACGATACGCAACTTCGAACATTGAAACTAATAAAGGAGATCTTGTTGCAAATGAAAACGAAACGGGAAACAATGGCCGACATCAACCAATTTGGCTATCAAACATTGTCTAAAAGATGGGCTGAACTTACCAAGCTAGTTGCATCTTCAGATCGATTCTCCCTTCAAAACCTCTCTCCGCAATATTGCAACTACTTCAAAAAAGTTAGAGACCCCTCACCATGTATGTTCCTAGCTAGCTACTTAATTAATTTCTCTAAATTTGTCCGTTTATATCTTCAAACCAACTGCATATATACATGCTTAACGCAATTGCTAATTTACATCAATTAATCGCAGCATTCAGATGGCTAAAGTGTGAATGTGAGGAAGACACGGATTGTGAAGCTCTACTCAGGAATGCTCAAATTAAAACTCAAAGCGGAGTGCTTTTTGAAGCCGATAGTCGTTACACATGCTTGAGTTTAATCAAGACGGAGGACGACTTCGATCAAATAATGGAGAAGTTGAAGCCTCTTGTATCTGCAAAAAGGAGCATTCACCTAATGGAAGGAAGCATGGACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	BAD06448.1	5.0e-154	alliinase-like
Swissprot	P31757.2	6.6e-127	Cysteine sulphoxide lyase
trEMBL	Q76BK3	3.6e-154	Alliinase-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34060.1	39.33	1e-92	337		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G03787	AT1G34060.1	450	205	8	16	403	6	449	39.33	1e-92	337
AfisC1G03787	AT1G34040.1	447	199	7	13	404	13	448	40.72	7e-90	327
AfisC1G03787	AT1G23320.1	371	190	9	93	406	22	384	31.27	2e-52	202

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04863.10	EGF_alliinase	Domain	38	92	97.4	4.2e-28
PF04864.10	Alliinase_C	Domain	151	402	382.6	1.4e-114

Gene Ontology

Accession	Ontology	Name
GO:0016020	C	membrane
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0009888	P	tissue development
GO:0009605	P	response to external stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009851	P	auxin biosynthetic process
GO:0009908	P	flower development
GO:0016829	F	lyase activity
GO:0048364	P	root development
GO:0048825	P	cotyledon development
GO:0070529	F	L-tryptophan aminotransferase activity
GO:0070546	F	L-phenylalanine aminotransferase activity
GO:0070547	F	L-tyrosine aminotransferase activity
GO:1905392

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16903	TAA1; L-tryptophan---pyruvate aminotransferase	EC:2.6.1.99	Tryptophan metabolism	ko00380

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network