result

Gene information

Detail information of AfisC1G03847

Location

Gene	Chr	Start	End	Strand
AfisC1G03847	chr1	720478226	720480598	-

Sequences

CDS

Protein

Gene

>AfisC1G03847
ATTCTCTGGTCTATGCACAATGACAGTTACAAGATCTGGAGAAAATCTGGTCGGATCTTTCCTTGCAAGTAGTTGTGATTTTCTTAGATTTGTTTTTTGGACCACTCTCATATCACCATAAATTTATACCCACCTCAATTTCAATACCATAAATCCAAACCACCATTAACTTTCTTCTTCTTCTTCATTACTATTTCATTCTCGATTTTTTCTGTCAAAGTATTCCTCTTCTAGATATCAATGGCAATTTCTGCTGAGTCTCAATATCATGTCCTTGCTGTTGATGACAGCGTACTGGATAGAAAACTCATTGAAAGATTGCTCAAGACTTCATCTTTTCAAGGTACTTTCTTTCATATGATAACTTCACTACAGGCACCCATTTCGTCTGTTAATTTTTTCGTTGCTCTAATGTAATCTAAATTTGACTTTGCACAGTTACCACTGTGGATTCAGGCAGCAAAGCATTGGAGTTTCTTGATTCCCCTCACCACCATCATGTAAATTTCCTTCCATTTAAAAGACCAATTATATTATATATCTTTATTAGACTACAAAGACTGATTCTTGTTTTGTTGAATTACAGCAAGTAGAAGTAAACCTGATAATTACAGACTACAGTATGCCTGGAATGACAGGATATGATCTGCTCAAGAAAGTGAAAGAGTCGTCGTATTTGAAAGATATTCCAGTAGTCATCATGTCATCAGAGAATGTTCCTTCACGTATCAATCGATGTTTAGAGGAAGGAGCTGAAGAATTCTTTTTGAAACCGGTTCAGCTTTCAGATATGAGTAGACTCAAACCTCATCTGCTAAAGTCTAAGCTCAACGACGAGGTGCCAATTCTTGAAAACAAAGAGGGCATAAGTATAAATGTTGTTATAGATAGCGCGACTGAAGAAAAGGCCTTGAAAAGAAAAGCAATTGAGGTTGAAATTGTACAGGAGCAGATAACAAGGCAAAGACTGATCACTAAAATCTTGTTGTAGAATGAGCTGAAGTCCTTTACGATTTCTCCAATTTTGATTAGTTATAATACAATGAACATTTTCATTTTGGAATTTTGAGGGAAGGAACTCCATCATCATATAATAATATGGAATAGTTCGTATCGTTTATTTATTGTTTTAAGTATTGAGATATATTTCTAGATATGATAGATAGAGTTTTATGATCGCAAACAGCATTAATCTGAAAAATTAAGATCCAGCAAGGTATATGGAAGCTTACAAAAACGAATCTGGTCAATAATTAAGATTGATTGGACAAATTCTAAGAGAAAAAAAATTGAAGATCATCCACATCACCAATTATAATACTAAAATCAACAACAGCAGCAACATTTCTGGAATCATCCAATAAAAATGTATACCATCTCCCTTTTTCCTACATGGTTAATTATAAGAATGTATACCATCTCCCTTTTTCCTACATGGTTAATTATAAGAAAAGTCTATGTGCTAATGTATATGTAAATAGACATTAAAGGCGTTGAAAATCTGGACACAGTATATCTGAATTGCGAAGTTTGCAAGACTTTTGGTTGAACCGAGAAATTATACTGAACAATTATTCGAAGATTTACTAATCAGGGTCGATGATTTGATAGCGAAGGATATACTTTTTGCTCCTGTTATGACTGTTTCACAAATAAAAGTAAAGCTTACAGTTCCATAGCCGGTGTGGATTGTTCATGTGGTACACAATTTCTAGTTGGGCAAAGAAAAAGAAAAAGAAAATGAACTAGTGCTCATTAAAGGAGAAGAACTTACATCGTTGCTAAGGACTTGCGTATGTTTTTCTTCAGTTCTTTGTAACACTTTTTCAAAAGTAGGGGACTGAAGATGTATTGTGGATACGCGTGTAAAACATGTTGTGGGTACTAACAGAGATGTGGTAAACAACGTCTTTATTATAAAACCATGTGGAAAATTGAATTTGGTTTGCTAGAAATATCATCCAACGTTTTACTAACCTGTTACAGTTGATGATATTACCAAAGACGTCACTTACTGCTGTATTCTTGAAGAATCCATGCTCACAACCGGACAAAGAAACAAAACGGACCAATATCTCTCAATTCAAATTTGGAAGATGCTAAAATGAAAGGTGATTTGAAAATTCTTTTGTCTGAATCGAATCGAGAAAAAGACAATAGATCACAATCATAAAGTTATGAGATCTTGAATAAAGGAAGGAATCAGGTAAATTGTGTTTATGTACTCTTATAAAGTTTTGATATTTTGTTCTGCTGAAGCTTCAGGTTTAATTACTTCTTTTTGACTTACTGTATATAATTTGATGTCAACATTATACTGGGCTACTTTTGTATTTATCAATTAACAATAAAACTTTACCCATTAGAAAACAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020254562.1	7.5e-57	two-component response regulator ORR9-like
Swissprot	Q2RAP3.2	6.8e-55	Type A response regulator 9
trEMBL	A0A5P1FP42	5.4e-57	Response regulatory domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G57040.1	69.48	1e-58	222	ARR9;ATRR4	response regulator 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G03847	AT3G57040.1	154	32	1	1	139	1	154	69.48	1e-58	222
AfisC1G03847	AT2G41310.1	152	36	1	1	139	1	152	67.76	2e-56	214
AfisC1G03847	AT1G59940.1	131	44	1	8	133	32	162	62.60	3e-42	167

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00072.21	Response_reg	Domain	11	124	80.5	8.8e-23

Gene Ontology

Accession	Ontology	Name
GO:0000156	F	phosphorelay response regulator activity
GO:0000160	P	phosphorelay signal transduction system
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009736	P	cytokinin-activated signaling pathway
GO:0009793	P	embryo development ending in seed dormancy
GO:0010161	P	red light signaling pathway
GO:0010200	P	response to chitin
GO:0019827	P	stem cell population maintenance
GO:0042752	P	regulation of circadian rhythm
GO:0046777	P	protein autophosphorylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14492	ARR-A; two-component response regulator ARR-A family	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network