result

Gene information

Detail information of AfisC1G04956

Location

Gene	Chr	Start	End	Strand
AfisC1G04956	chr1	900836714	900837028	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	ERN19273.1	3.9e-39	hypothetical protein AMTR_s00061p00216770, partial
Swissprot	Q9SFD8.2	3.9e-36	Protein LEAFY COTYLEDON 1
trEMBL	U5DFR7	2.8e-39	CBFD_NFYB_HMF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G21970.1	66.35	8e-39	154	AtLEC1;EMB 212;EMB212;LEC1;NF-YB9	Histone superfamily protein

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Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00808.20	CBFD_NFYB_HMF	Domain	3	67	87.6	4.3e-25

Gene Ontology

Accession	Ontology	Name
GO:0000049	F	tRNA binding
GO:0000436	P	carbon catabolite activation of transcription from RNA polymerase II promoter
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0002098	P	tRNA wobble uridine modification
GO:0016887	F	ATPase activity
GO:0016602	C	CCAAT-binding factor complex
GO:0019760	P	glucosinolate metabolic process
GO:0032447	P	protein urmylation
GO:0033588	C	Elongator holoenzyme complex
GO:0043457	P	regulation of cellular respiration
GO:0046982	F	protein heterodimerization activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08065	NFYB, HAP3; nuclear transcription Y subunit beta	EC:-	Antigen processing and presentation	ko04612

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network