result

Gene information

Detail information of AfisC1G05142

Location

Gene	Chr	Start	End	Strand
AfisC1G05142	chr1	937355353	937358162	-

Sequences

CDS

Protein

Gene

>AfisC1G05142
ATGTTAGCCGATAAGCTTCCAGTTGAACATAACAATGATTTCCTACCCTCAGTTCGCAATATCATCAAGCATTGGCACAAAAAACAGACTACTATTTTGATTCTTGATCAGGTAGGTTATCAGTTGGTATGCATATGCAACATATCCTCCTTGTAATTGTGCGTGAAATCAAGATAATATTTTGGTATGTCATTAATGATGCACGGGTTTTTGGTTTTCTTCAGAGTAACATTTAATGCGTTCTTATTTCTGGCAGGAGGCAAAGGTTAAATCTATAGTATTCATTTCATACCTGCTCTCTTATAGTTGTCATCCTTTCCTTATTATTTCTACCATCCCTTCTCTTTCAAACTGGGAAGCTGAGTTTGCTCATTTGGCACCATCCATAAACATTGTTGTTTATAGTGGAAATAAAAAAGCTCGTGAAATGATAAGGTCCCTCGAATTTTATGAAGAGGGAGGCTGTGTTATGTTTAAGGTCCTCATAACATCCCCTGATGTAATCCTCGAGGTAACTATGGGTACACTTGATTTTGTATGCATGTTCCTATTTTGTGATTGTTCTACTCTGGATTTATCCATGAATTACTTATTGAACCCCTAATTCACAAAATCCCTGACACTAATTTTACTATCATTTAGTATCTTTGCTATTTCAATTGTAATAAATGGTTGTTAAAGTGAAGATTCATGAGGATCTCACTGTTAAGGTTCAATTATTCAGTCTCATTCAAAACTTATTACAAAAATAGACTAGTTTTTTGCTTTTGTACAAGCAGACTTTCAAAATGTGAACGTACGTACGTATATACTCAAATTTTGTATAATGCGCATGTATAAAAATTAGAAACAAAGACTATTTTTGTAATATAAGTTTTAGACAAGGCTTATTTGTGAAATAAGTTGTGTGTTGATGCTTAGTTTTGTAATTTATTCTAAAAAGAAGAAGAGGGCAATGATTAAGAGAGACATGATTTGTACACTGACTGGAATTTCAAAAGAGGTTATTGGATGCTTTAATTAGACTGCAAGCTTTCTATTCCTGTTGGATGTTATTTTTTTTTCTCCTTGCAGTCTTATACTCTTGTTCCTTTAGGTGGATACATATGTGTTTGTAGCCTTTCTACGCAGTAGTTAATAAAATTCTTAGTCGTTCCTTTGCAATTAATTGGTGACTTTTAATATTCCAAAGTCTATAATATATTTATTTTCCTATTACATTTTATATTACTTTGTTTTCAATATATTGCTCAACAGGACTTTCAATATTTGGATTGTCTTGTCTGGGAGGGAATAATTATAGATGACTATCATAAAAAGGAAATTTCTGAACAGTTGGACAAGTTTGCAATTCTCTCAGAATTCAAACTCCTAATTTCAAATGGTGTACCTAAGGTAGATTTGCTACTACTCCCTCATCAATAATCTTGCCGATCATTTTATTTTCTCAAGAAACTATTGCTAATTGCTATATATTACTTTCATTTTCGACACAAACGGAACAAACTAATACTCAAGATTCAAATTCCGATTCAAGTGAAAATGGCAATGAAATTTCAGTTAGTTTAAAAAACTCATTTATTTCTCTTATAATGTAGGTTGCAAGGCTCATCAAGAACATTATTTTGTTCTTTAGGAACCTAATTAGTTTATATGTGCCAAACTTATTTTTTCCGTTAATTTAACTTCAAGTATATAACAAATTTTACTAATAAAAAAAAGTTGGGGCATTATCTATCAGTGTATGGGGCATGAGAATTAAGGGACATGGATCATTACATGAATTTAACTGACAACTACTACTAATAACTTAAGTCAAAAAGTGAAATTCTACATTCATGAATTCATCCATATTCTGCTATTACTTCTTAAATATCACTTGCGTATACATTTCCTTGATCAGTTGGGCTCTGAGACTGATACTAATAACCCTGCTATATATTTACAGAGAAGTGGACCTGCTCTCAAAGATTGTAATAGCTCACAAAGCGCATATGCACATGGAGCACAAGAACATGATGTGCTACTACGTGAAGAAAATCCTGAGGCAGAGCAAGTTTATTCTGACATGAAAGCTGCACGTAATAGTCAAAAAGTGTTTAATCCCACCCCTCTTCAGAAGCAGATGACTATGATGAGCCCATCAGAATATTTAATTGCTCATTTTCATGAAAAAAGGGTGACTATCTTCTTGCTTACCATTTTTATATTGTAGTTTTTATACTGTATACTAGCTACAGTGAAATGTTCATTCCTAAATGTTGGCATCAAAAAATTCTGTATTTCGATATACACTTTTGACATTCTCTAAAAATTACCTAAATTAATGTTTCATTCATTTTCCTATTTTCTCAATTTGCCTTGTTTTCACTGTGTGTGCACGCATGTGCGTGTGAATGCACACACACTTGCAAATTAGACTTGAGACCATTTCTCAGTCAAGTTAAGAATAACTGCAAAATAATTATACAGCTTTGTTTTAAGTAGTAGAGATAAGTTTGTAGTTTATCTAAGTATTTGTTGTCCTAACCATGTTTATGCAATATAATAACATTTTATTATTGTTGCAGAAGTCGACTTTAGCTGTAGAATGCGAGAAAGAGTTGGAGGATGTGCAAAAAAAATACAATCGCCTCCTTCTGAATGAAGAGCAAGCGTGCAATCAAAACTTAAAGCTAGTAAAGGAATTACAGTCCACCAGTCATAAAAATAAATTTTGGGCGGAGTTGCTGAAAGGCCATTCCACCGAGCCTTGTAAGCTTGGAAGCTCACAAGAGTTTCAAGGTATGACGTCTTTAATATATCCATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_029117149.1	1.2e-41	uncharacterized protein LOC105033425 isoform X2
Swissprot	F4JTF6.1	1.5e-14	Protein PICKLE RELATED 2
trEMBL	A0A6I9QBY8	8.4e-42	uncharacterized protein LOC105033425 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G31900.1	30.13	3e-16	82.8	CHR7;PKR2	chromatin remodeling factor, putative

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G05142	AT4G31900.1	156	99	5	20	167	234	387	30.13	3e-16	82.8
AfisC1G05142	AT4G31900.2	156	99	5	20	167	193	346	30.13	4e-16	82.0
AfisC1G05142	AT2G13370.1	151	86	7	30	167	644	791	32.45	3e-14	76.3

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0004386	F	helicase activity
GO:0005488	F	binding
GO:0016887	F	ATPase activity
GO:0006259	P	DNA metabolic process
GO:0006342	P	chromatin silencing
GO:0018205	P	peptidyl-lysine modification
GO:0031056	P	regulation of histone modification
GO:0043229	C	intracellular organelle
GO:0043414	P	macromolecule methylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network