result

Gene information

Detail information of AfisC1G05844

Location

Gene	Chr	Start	End	Strand
AfisC1G05844	chr1	1070550196	1070553489	+

Sequences

CDS

>AfisC1G05844
ATGAGCTCCTCCTCCGATGAAGAGGCTCAGGATGGAGCGAAAAGAAGATTTGACCGAGCACAGGTTGAAGTTCTAGAAAGAGTTTTTAGTACTTGCCCTAATCCTGATGAACGTCGAAGAATTGAGATGAGTAGAAGGTTAGGACTGAAGCCAAATCAGATAAAATATTGGTTTCAGAATAAAAGGACTTTTATCAAAATACAAAACGATAAGCTTACTAACATGCATCTTAGCGATCAAAACGACAAATTAAGAAGTGAAATCGCTGAGATGCAAACAGCGATGAAAAACTGTATGTGCTCACAATGTGGAGTTCAATTATCATCTCATGAAGAAGAAGAGCAGTTGCTTTTATCGAACAACGAGAGCGTTAAGGCTGAGATTAATCGAAGCATGGAAATTATAACTAACCAACTGGGAAGGTCATTTGCTGAAATGAAGTTGATGCAGTTTCCTTTGGGCATTGATAATGTTGTATCAAATAACACTTCCATGAATATTGCATTACCACCACAACAGCAGCAGCAGCAGCAGCTTCCTGTTTATGGTTTGCTCTCAAGCAGTGATAAAGCATTGCTTGTAGAGCAAGCAACAAATGCCATGCAGGAACTCGTAGAACTAACCAGATCAACTGGCCGGTATTGGATTAAACCCATGTACGAAGACAAGGAAATACTTGATCTTTTTAACTATCGAAAGGCTTTCAAAAGGATCAATAATCATTTGCGTAACAAGGATACTCAAGTTGAGGCTTCACGAGCTTCTGGTCTTGTGTGTATGAATCCTCTTTCTCTGGTTGATATCTTGATGGATCCGGCCAAGTGGGCAGACCTGTTTCAGACTGTCATGGCTAAGGCAAATATTATTGATGTCATTTCTGTAGGAATGGGTGGAGATAATCACAGTGGATCGTTATTGCTGATGCATAGTGAAATTGGAATTCTTTGTCCTCTCATCCAGCCTCGCGAATATTACTTTGTTCGCTATTGCCAGAGGGTCAACAATGGTTCTTGGTTTATAACCGATGTATCGGTTAATTTTCCAGGCTTTTTACCAAAGAATAGAAGGTTGCCTTCAGGCTGCATGATTGAAGAGACGCCTAATGGTTACTCTATGGTCACTTGGGTAGAGCATCTAGAAGTAGAAGAAAGTAATCGTAATCTTGGAGTCTTTCATAATTATATTCATAGTGGCAAGGCTTTTGGAGCTCAGCGCATGTTAGCAACACTTCAAAGAGTGGCTGAGAGGTTTTATTACATGCGGATGCTAGGACCTCAAAACATGGATACTGGAGGAGTGATTTTCACACAAGAAAGCAAAAGAAGCTTGATGTCTTTATCCCAAAGCATGGTGAGATCATTTTGTAGTAGCTTGTTTCCTTCAAATGATTGGATTATTATCATGGACTCTGACGAGATTAAAATTCGAGCTCTTCCACATCAAATCATTGATAACTTTGGGTCTAATGGAATCATTCTTAATCCCATAACCTCTATATGGCTACCTTTTTCTACTGAACGAATTTTTAGCTTCTTTGTGGACGAATCAAAAAGAGATTTGTGGGATATTTTATCGATTGGAAAAATGATGCAACCAATCACAAACCTCTTCACTGGTTTTAACATTGGAAATTGTATCTCGCTCCAACGAGCTGGGACTTCAGATGAGAACCCGATACTACTGATGCAAGAGACAAGCACAGACTCATCAGCTTCAACGCTAGTCTTTGCATCGATTGACAATTCAATTTTGCAGATTGTAATGAGTGGAGGTGAAGCACCGAATATCCCTCTCTTTTCTTCGGGTGTTGCAATTTTACCTAGTTGTACTTCATCGGTGAGCATGGGACCTTCCAGTAGTTCGAATCCAGCAATCGCTGGTTCATTCATAACTCTGTCATTTCAGATTCCGTTGAACAATCAGTCTACAAAAGAATTGAATTTGAATATGATAAACCGCTTGAATAGAATGATGTCGGATGCAGTGAAGAACATGAAGACTACATTGAACTCCTCCCCTTGA

Protein

Gene

>AfisC1G05844
ATGAGCTCCTCCTCCGATGAAGAGGCTCAGGATGGAGCGAAAAGAAGATTTGACCGAGCACAGGTTGAAGTTCTAGAAAGGTACGCTAAACAATATTCATCTTACATGCGATGTCAGTTTCTTTTTCATTTTTTATTGTTTGACATCTAGTAATGGGGCCTGATCTTATTTTATTTTTAATGGGCAGAGTTTTTAGTACTTGCCCTAATCCTGATGAACGTCGAAGAATTGAGATGAGTAGAAGGTTAGGACTGAAGCCAAATCAGATAAAATATTGGTTTCAGAATAAAAGGACTTTTATCAAAGTACGGTTTTTATCATCTAAATTTTCATTTTATATCATAATCACTGTTGTTACACCCATTAATTCATCTCTTAATTGATGTAGTATTTGGTTTGATCGATAAACTGTATGTATGATTTCATTCTTTTTTTAATTATAGATACAAAACGATAAGCTTACTAACATGCATCTTAGCGATCAAAACGACAAATTAAGAAGTGAAATCGCTGAGATGCAAACAGCGATGAAAAACTGTATGTGCTCACAATGTGGAGTTCAATTATCATCTCATGAAGAAGAAGAGCAGTTGCTTTTATCGAACAACGAGAGCGTTAAGGCTGAGATTAATCGAAGCATGGAAATTATAACTAACCAACTGGGAAGGTCATTTGCTGAAATGAAGTTGATGCAGTTTCCTTTGGGCATTGATAATGTTGTATCAAATAACACTTCCATGAATATTGCATTACCACCACAACAGCAGCAGCAGCAGCAGCTTCCTGTTTATGGTTTGCTCTCAAGCAGTGATAAAGCATTGCTTGTAGAGCAAGCAACAAATGCCATGCAGGAACTCGTAGAACTAACCAGATCAACTGGCCGGTATTGGATTAAACCCATGTACGAAGACAAGGAAATACTTGATCTTTTTAACTATCGAAAGGCTTTCAAAAGGATCAATAATCATTTGCGTAACAAGGATACTCAAGTTGAGGCTTCACGAGCTTCTGGTCTTGTGTGTATGAATCCTCTTTCTCTGGTTGATATCTTGATGGATCCGGTTAGCACTTTTCTAGTTTTCACCTCCTTTTTTTTAAAATTATTAATGGGCCTTTTATTCAAAATTGAACTTTGTATTTATACTGTAGGCCAAGTGGGCAGACCTGTTTCAGACTGTCATGGCTAAGGCAAATATTATTGATGTCATTTCTGTAGGAATGGGTGGAGATAATCACAGTGGATCGTTATTGCTGGTATTTAACTAGAAGTACTTCATTCTCATCATAATGGTTTCCGATTTTTTCTAGCCAAAATATATAATTGAATAATTCTTCAATGCAGATGCATAGTGAAATTGGAATTCTTTGTCCTCTCATCCAGCCTCGCGAATATTACTTTGTTCGCTATTGCCAGAGGGTCAACAATGGTTCTTGGTTTATAACCGATGTATCGGTTAATTTTCCAGGCTTTTTACCAAAGAATAGAAGGTTGCCTTCAGGCTGCATGATTGAAGAGACGCCTAATGGTTACTCTATGGTAACTCACTCGTGCTAGATATCATATGAAATGGAAGAAAACATAAAACACTTTATGCTATTGTGTTGTTTGATGGTCGGTGTAGCTTATGAAGTTGTAAAAAGCTGTCAGTTTCTACAATTGAATCAATGAGTGTTTGACAATAGCTTTTAAGTACCGAAAAGCAGATAACGAGTTAGTTTTATAATTTGAATTGTTTGATAACAACTTAATTTTCTGATTTTGAAGTAAGAGAGAATGATAAGTTATAAGCAACATATACTTTCTTGTTACATATTTCAAATTTCAGAATTAAATTTTGTCACAATATCAACTTATCTATCCAAACACTTCCACTTTTATTTTTCACTCGAAACTAATCATTCTGGGAAAATTTAAATTATGTTGTACTGATTTTTTAATTATATTTATCTTTTATATCATTTACAAACTCAATGTAGGTCACTTGGGTAGAGCATCTAGAAGTAGAAGAAAGTAATCGTAATCTTGGAGTCTTTCATAATTATATTCATAGTGGCAAGGCTTTTGGAGCTCAGCGCATGTTAGCAACACTTCAAAGAGTGGCTGAGAGGTTTTATTACATGCGGATGCTAGGACCTCAAAACATGGATACTGGAGGAGGTACAAATTTCAAATTACAATTATTTCTGCATTGTGTTTTCCTTGATTTTTACTTATAATGGCATATTTCAGTGATTTTCACACAAGAAAGCAAAAGAAGCTTGATGTCTTTATCCCAAAGCATGGTGAGATCATTTTGTAGTAGCTTGTTTCCTTCAAATGATTGGATTATTATCATGGACTCTGACGAGATTAAAATTCGAGCTCTTCCACATCAAATCATTGATAACTTTGGGTCTAATGGAATCATTCTTAATCCCATAACCTCTATATGGCTACCTTTTTCTACTGAACGAATTTTTAGCTTCTTTGTGGACGAATCAAAAAGAGATTTGGTAATTAACATTTCTTGTAATTCTTTTCCTCATGCTATTTAGAATGAATCATGATGATATTTACAGTCTTTTTTTTTCCTTTTTCTTTTACTCGTTTGTGACAGTGGGATATTTTATCGATTGGAAAAATGATGCAACCAATCACAAACCTCTTCACTGGTTTTAACATTGGAAATTGTATCTCGCTCCAACGAGTAAGTTTTCCTATTCTTTCTTAGTATTATAATTTTGTGTTTAAAACTAACACAAAGCAAACATGCTATAGACAGTCTTCTAAGAAAATGTGTTGGGTTACTTCTGGACCTTTGGTCATATATAAGGGGTGGTTACTTTCGAAACATTTTTCAGAATATGGATAGAAAGAAGAAACAACAGTATCTATGATTTGTCTAAATGCTATTATATCATAACATTATACTGTTATTACAGGCTGGGACTTCAGATGAGAACCCGATACTACTGATGCAAGAGACAAGCACAGACTCATCAGCTTCAACGCTAGTCTTTGCATCGATTGACAATTCAATTTTGCAGATTGTAATGAGTGGAGGTGAAGCACCGAATATCCCTCTCTTTTCTTCGGGTGTTGCAATTTTACCTAGTTGTACTTCATCGGTGAGCATGGGACCTTCCAGTAGTTCGAATCCAGCAATCGCTGGTTCATTCATAACTCTGTCATTTCAGATTCCGTTGAACAATCAGTCTACAAAAGAATTGAATTTGAATATGATAAACCGCTTGAATAGAATGATGTCGGATGCAGTGAAGAACATGAAGACTACATTGAACTCCTCCCCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256822.1	1.2e-146	homeobox-leucine zipper protein ROC8-like isoform X1
Swissprot	Q9FX31.1	7.9e-114	Protein HOMEODOMAIN GLABROUS 11
trEMBL	A0A5P1FA69	8.9e-147	Homeobox-leucine zipper protein HDG11-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G73360.1	36.36	5e-124	442	AtEDT1;ATHDG11;EDT1;HDG11	homeodomain GLABROUS 11

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G05844	AT1G73360.1	693	400	12	11	670	30	714	36.36	5e-124	442
AfisC1G05844	AT1G17920.1	688	396	14	4	670	12	682	36.92	2e-119	426
AfisC1G05844	AT4G04890.1	699	414	16	5	670	49	736	34.48	1e-110	397

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	14	63	55.3	3.7e-15
PF01852.16	START	Domain	197	415	109.1	1.8e-31

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009828	P	plant-type cell wall loosening
GO:0009845	P	seed germination
GO:0009913	P	epidermal cell differentiation
GO:0010091	P	trichome branching
GO:0048364	P	root development
GO:0048497	P	maintenance of floral organ identity
GO:0048825	P	cotyledon development
GO:0090627	P	plant epidermal cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network