result

Gene information

Detail information of AfisC1G05910

Location

Gene	Chr	Start	End	Strand
AfisC1G05910	chr1	1085968433	1085969649	-

Sequences

CDS

Protein

Gene

>AfisC1G05910
ACAACAATAGAGGTCAAAATCCTTCTTTTAATGGGTTTTTGATTTTCTTCCTACATTTTTATATATCTTTTAAAAAACCAAAAGGGTTTCTTTTTGTACACCCAAAATTTGGTTTCATTTCTTTTTAGTTTTCATAGTTCGAAAAAGGTCACTTTTTATTGATCCTTTTTCACTAGATCTTCATCTAAGAACCCATACACTTGTTCTTAGCTTTTACATAAGAACTAGGTGGGTGTTTTTTCCTTTTATTTTACTTCATTTTATTTAAATTCTTAAACTTGTTCAAAACAATGTACGATACTTTGAATAGCGAGCTTATGAATGCACTTTTACCTTTTATCAAGAGTGCTTCAAGCTCACCACCTTCTTCTTCAACTTCAATCTCTCAACCTCAAATTCCTTCTTCTTCTTCTTACTCTTATCCTCAAAATACAAACTTTGACTTCATGTCCTATGCTCAAAATTCTAGCTTTTATAGTCAAGATCCTAGCTTTTACTATCAAAATCAAATAATTCAAGTGCAACCGCATCTACATGCATCATCATCATCATCATCATCTATTATAGACAACCAAACCAACCAAAAAAGACATCATCTTGGGCCAAGAGCCCAACCCATGAAGCCCAAAACTCCAGACACCAAGCCTGTAAAGCTATATCGAGGCGTCAGACAGCGGCATTGGGGCAAATGGGTGGCAGAAATAAGACTTCCAAGAAACAGAACAAGGCTCTGGCTAGGTACATTTGACACATCAGAAGAAGCAGCTTTAGCTTATGATAAAGCTGCTTTTAAGCTCAGAGGCGAATCTGCCAAGCTGAATTTTCCAGACTACAAAAGGAACGGTGTTCACTACGGACCCGAACTGCATTGTTCGGTTGGTGCTAAACTTAACGCCATGTGTGAGAACTTGGATAAAAGCAAAAGCAAAGAAGTGAAACAGAAGAATAAGTCATCTGCTTTGGAAGTGGAAGAAGTCAAAGAATGGGATTTTGAGGAGATGGATAGTGTGCTGTTGCAGAAGTTTCCTTCACTTGATATTGACTGGGATGAAATTTTCAGTTGATCGGCTACTGCAGATGGAGTTTTAGACATTTGTATGTTGCTGCTGTAAAATCGTATGTACTGGTTTTGCTGTCTGATTTTTTTATGATAGCATTACCTGGAGGTTTAGATTCAGTTTATGTAAGTAAGAATTTATTTAATTTGAAAAGTGTTG

Functional annotation

Database	accession number	e-value	annotation
nr	KAF3326420.1	9.2e-42	ethylene-responsive transcription factor RAP2-13-like protein
Swissprot	Q9LM15.1	5.1e-37	Protein RELATED TO APETALA2 13
trEMBL	D6MK00	2.2e-45	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G39780.1	36.91	1e-41	166		Integrase-type DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G05910	AT4G39780.1	298	100	8	3	255	12	266	36.91	1e-41	166
AfisC1G05910	AT1G22190.1	295	82	9	3	256	17	254	38.98	2e-40	162
AfisC1G05910	AT1G78080.1	327	114	11	6	257	18	334	39.14	2e-40	162

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	123	172	55.7	3.9e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005737	C	cytoplasm
GO:0005730	C	nucleolus
GO:0009416	P	response to light stimulus
GO:0009651	P	response to salt stress
GO:0009737	P	response to abscisic acid
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009873	P	ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0034059	P	response to anoxia
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0048825	P	cotyledon development
GO:0071214	P	cellular response to abiotic stimulus
GO:0071497	P	cellular response to freezing
GO:2000070	P	regulation of response to water deprivation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network