Gene information

Detail information of AfisC1G06507

Location

Gene	Chr	Start	End	Strand
AfisC1G06507	chr1	1180902132	1180902882	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020274850.1	5.3e-44	WUSCHEL-related homeobox 3A
Swissprot	A2ZH47.1	4.4e-27	OsNS
trEMBL	A0A4S8JE24	2.1e-42	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G28610.1	75.71	7e-29	123	PRS;PRS1;WOX3	Homeodomain-like superfamily protein

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06507	AT2G28610.1	70	17	1	70	1	70	75.71	7e-29	123
AfisC1G06507	AT3G18010.1	69	19	2	70	70	138	72.46	4e-24	107
AfisC1G06507	AT1G46480.1	68	24	7	74	89	156	64.71	4e-22	100

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	6	66	60.6	8.5e-17

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008284	P	positive regulation of cell proliferation
GO:0009536	C	plastid
GO:0009733	P	response to auxin
GO:0009908	P	flower development
GO:0009942	P	longitudinal axis specification
GO:0009943	P	adaxial/abaxial axis specification
GO:0009947	P	centrolateral axis specification
GO:0010067	P	procambium histogenesis
GO:0010078	P	maintenance of root meristem identity
GO:0010654	P	apical cell fate commitment
GO:0010865	P	stipule development
GO:0043565	F	sequence-specific DNA binding
GO:0048825	P	cotyledon development
GO:0051301	P	cell division
GO:0080167	P	response to karrikin
GO:0090451	P	cotyledon boundary formation
GO:1902459	P	positive regulation of stem cell population maintenance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network