result

Gene information

Detail information of AfisC1G06782

Location

Gene	Chr	Start	End	Strand
AfisC1G06782	chr1	1230866587	1230868508	+

Sequences

CDS

Protein

Gene

>AfisC1G06782
ATGCCAATACCTCTTGCACCTTACCCAACTCCTGCTCCTGTTTTACCTCCTAATGGTAATTCCTTATTTTTCCTTGCTTATAAAAATCACAATAGCATATAGTTCATTGATATGAAAAAGAAAACTAGGCATTCTTTCACTAGTCTGCAAACAACATCCATGTATTTTAGAAAAGAACTTAACCATGTAGGTTGTAAATACCATAATGTGCATAGTGATTTTCACCAAACAGATTTATAGAGCTCTATGTTTCATATCATTTAATTGATATGCATTTTTCAAAAATAATGTAGGTGCACAAAGTCGGCTTGTGTGTTCGGGTTGTAGAAATTTGCTTGTGTATCCTCAAGGTGCATCATCAGTATGTTGCACTGTTTGCAATGCAGTCACATCAGTGCATCCACCTGGTAATTTCTGTGTTTGTAATACTTGCCACGAAGCATTCTTTGAGACTGAAAGCTATACTATTTGTGTTATCATAGAAAATTTAGATTTACAACACAAATAATTCACCATTTCATTATATATATCTGCAAATAAAGACAAGACGAGACATGATTTGATAAAGATTTTTCTTAGGTCCCTACATATTATTATTTGCAGATAGGAGATTTTAGAATGAGAAAACACCAAATTACTCCAGATAGTGACCATGGAAATCGGAACAAATATCATAAATCAAAAGATTTTCTTTATAACAAGTTGTGGCATGCCTGAGCTGGGCCTTCAATGTTTGTTCCAAGGGTTGGGGAAAAGTTTTATACTTTTCTCAAGGCACAACATAGAACAAGTAAAATTAGTTGAATTATGCTTTCATTCTTTTATGAATAATGCATGTTTGTATTTTGATCAGCACTTGCTGAATATGTTAAATTTTTTGAAAATTCTGCTTATTAGAAGTATTCGATGCGATTGATTACAAAAGTATTAAGCAGTGATTTTTAGACAAATGAATGTCTTATTTTGATTGAATTCATTGCTTTAGATGATCATGTTGCTAAAGAGTTACATGTTTAGTGCATTGCTAGAGAAAATACGTAGTAAATTTTTACATGTCTTCGTTCTTACTATTAAAAGTGAAATCAAGCAAGAAAATTTTGGATAATGGATATGTAACTTGCTCTTGAGAATCAGACCTTTATATGTAAATGCATATTATTATACCATAATCTCATATTTCTGAAAGAATGTAGGAATTAGTTCAACATCGACTCATTTGTGTTAACAGGGTTTGTTTGCTGCAAAAGCTATTAATTAATTGCTTTCCACTTGATTTTATTTTCTGAAATAACTTAGCTGTGCATAAATATGGCTTCCATGTTTATGTTTTTTGTGGATAACAAATATTCATGGTAATTCGATTAGTTAGATATGAATTTTGAGTTTGCAGAATGTAGTTTTTTGTTAATCAGTCTTATGATTTTGCATTTCATCTTTCTAACTTTCCTTATTCATGGTTTCTTTTTTTATCAACCAATCTTATCTATGCATTATGCGAACCAAGCTTTATGCCATTTGGTTCAACTCATCTTTCTCAAGGTACCTCCATTTGTCAATTTCTTCCTTCGTGCATTCATCATTATGATGATCTTTACATGTATTTGAAATGCTTTAAATTTTATAGGCTGACTGGTACTTGGTGCTCAAATATAACGCACTAATAACGTTGGATTATAACAACCATTTACCATAAATTCAATATTATTAAATATATTAAGGAGATGGAAACTGTGCCATTGGAGCCTAACAGGTATATGATGTTTTTGCTAGCGTGTTTAGTGTAGGTTTTTATTATTCGACTTTCTCCTACTAACCAGCCTTGATAATTTTTTTACTAATCCCTGTTTTAGATTCTTTCCTTTATACTTCTTTTCTTTATTTTTGCAGATCAAATCCTTAATAGTAGTCACAAAACCTATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_018684715.1	7.0e-18	PREDICTED: protein LOL1 isoform X2
Swissprot	Q0J7V9.1	4.4e-17	Putative zinc finger LSD1
trEMBL	A0A8N4I514	2.8e-16	protein LSD1 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G32540.2	66.04	6e-11	62.4	LOL1	lsd one like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G06782	AT1G32540.3	53	11	2	8	57	20	68	66.04	6e-11	62.4
AfisC1G06782	AT1G32540.2	53	11	2	8	57	20	68	66.04	6e-11	62.4
AfisC1G06782	AT1G32540.1	37	8	0	20	56	64	100	78.38	1e-10	61.6

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06943.9	zf-LSD1	Domain	26	50	42.4	4.1e-11

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001666	P	response to hypoxia
GO:0002240	P	response to molecule of oomycetes origin
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005576	C	extracellular region
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0008131	F	primary amine oxidase activity
GO:0009536	C	plastid
GO:0009862	P	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104	P	regulation of ethylene-activated signaling pathway
GO:0010310	P	regulation of hydrogen peroxide metabolic process
GO:0010602	P	regulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618	P	aerenchyma formation
GO:0016575	P	histone deacetylation
GO:0034051	P	negative regulation of plant-type hypersensitive response
GO:0034052	P	positive regulation of plant-type hypersensitive response
GO:0045595	P	regulation of cell differentiation
GO:0048364	P	root development
GO:0051568	P	histone H3-K4 methylation
GO:2000121	P	regulation of removal of superoxide radicals

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network