result

Gene information

Detail information of AfisC1G07106

Location

Gene	Chr	Start	End	Strand
AfisC1G07106	chr1	1288438058	1288440900	-

Sequences

CDS

Protein

Gene

>AfisC1G07106
ATGGACAATAATTTTCAATTGCTTGCCAACTTAGTCTACGGTACCAACTGGAACACAATCAAAGTTCGTGTGGGAAGACTTTGGATTTTGGTCAGCCAGAAGACAAATGAACCTTACTCTCTAAACTTACAACTTCTGGACAGTGAGGTAAAATCTCCATCTACATTTATTAACACCCAACCTATCTATTCATTTATGTGTTTGTATGGACTGTCTTCTATAGGGGAATCAGAAAATGGCAGTTGTACGTAAGCACAATTTACATCGATTTGAAAATATGTTCGAGGAGCAGTCTATATATGAGATTACCAGGTTCAACGTACAAGACTCGGATAAAGGTTTTAAGGCTATTGATGAGCCATTAACTATTATCATTAGGGTGGACACTCAAGTAAGGAAGGTACATGAAGATACAAACAACATTCCTCGCTACAAATTTGGATTTGTGGATGATGACATACTTCCCTCTCGAATTAACAAGAAAGGTCAACTTACAGGTTCGTCTACAATTTTTTTGGTTTTAAACTCTCTTAGCTCACCATTTGTCAGTTGGAATAGTACCTAACCAATTTTTTAACCGGATTAGACGTAGGAGGCATTCTCTGTGCTATTACCCCTGTTCTTCATATTACTAGACAAGATGGAACTCAATCACTCAAAAGACAACTTCACCTTGAATTAACAAGGTTTTATATAGCTGTCTACCTACATTACAGTTTATCCAACATCGTTTTTTCAAAATATGTCCATCTTACTTATAAATAATTGATGTTCCTTTATATGCGCAGTGGGAAATCATCTATTGTATCTCTTTGGTTTGAAAAAAAAAATTTGATCGATGAGTCATTGCTTCAAACATACTCCCATCCAATACCAATAGTTGTTACATCTACCTCAGTTTCTGTTTATGCAGGTAAGTACTTGCTATTTAATCATAGATATAATAATTATTTGTTCACTACTACCGTTACTGTGCTTATTACATATCTACTACCTTCAACTGCAGTATCGATAGTTTATAACTCCACTAAAGCAACCAAGATATACACTAATATAAAAGTCTCCCCCGTCTATGAATATTTTGAGAGGTATTTGCTTAAACCTTGATTATACTATTACTGCATTTACTATATTAGCTCTGCTTATAATTTTTTGTCTGGTTTTATTTTCCTCTCTCAGTACACAGTATGCCATCAACAAAAAACTGCTTCTTCTTAACAAGACTCCTTCTACGGACGAGAACGCTGATGTAGAAACTGTTCAGTCCACTGTAGCACATCTTCAAGAAGAGGTTAGAGCTGCAAATTGTCGGGTATGTCTTTTTTTCTTCGTCGAAACCCAACATTATGTTCATGATTACAATCACATTTGCCTGCTTACATGATGCAGTTTAAATGACCATAACACTATAACTGCTTCCTACATATTATTCCCTCCCTTACTTTTTTAAACCATTATAAATTGTTTTTTAATATATCTTTCCGTTATGTTTTTAATATTCGATCCTTTTGCCTATTTGTTAATGTACTGTCTTATATGTTTAGGGAAAAAAATACATTGTTCATGCTACGATCACTAAATTGAGGACCTCTTCACCTTGGTTTTACATGTCATGCATGATGTGTAAAGGATCTGCATATCTTGAAGGAACACAATACTTATGTTCCAGATGCCACCAACCGGTGAAAGAACCTCTTAATAGGTTGATATCTCTTTACCTTAGCCAAACTATCATTATTATATATTTTAATTACCTATTCTTCCACAGGTATCATTTGAACATCGATATTGTTGATGGTACTACCTCATCAACTATGACCGCGTTTGACAAAGAGGCAGAGAAACTTCTTGGTGTGAACGTGGATGAAATGATCAAAATCTCAAAGATGGTTAAAAAATTTCATAAATTAATATTATCTTTACCGTTACATTTTCACCATTTTTTCATTTCCTTTAGTGCTTTTGTTTTTCTCTACTTCAGGAAAACGGAGATAAGAAGGTGGAAAACATTTTTCAACAGCCAGTAGGAATAGACGCTATTTTTGAATTTAGGCCGAACAACTACGAAATGAATAACAAAGATACAATCCTCACTGCTCGAAAAATAACAAAGAAAATCGTGTCTTCTCAGTTATCTTCTTCGGCATCACAGGTAAAAAGTTCGTGTAATTATACGTACAATAATATTTCACTACAGTTAAATTTTTAAAACAACTACCTTTTTTAACATTTTTCTCTTTTATGATTTGTGTACCATATTTTAGACCACAACCTTGACTACACAAAATACAAACGTTGATAATGGTTCAACCCAATCCACCTACACCACTTCAACTACATCTGATTACAAAGGAAAGAAACCGGTAATAAAACATTTGACAACTCTAACAAAGTGGTTGAAGTTCTGTACTCAAACTATTTATGTTCGACATTAATTTAAAATTCATGTAGGCCGTTGATGATGTTCTCAATGAAAGTACTGAAAGCAATCCTCCTCCATCAACTACAAAAAAGGGTGGAAGAAGAGAAATTTACATAGCTGTACGTCTGCTGACACACTTTGCATTAACCATTTCTACCATTTATATAGTTTTAATTTATTATTATTTTCAACATATATTCCACTGTCAACTTTTCATTATAATACTGTACAAGTCCATATTAACCTTCCCATTTCTACTATAAAACTTTCCTGATCTTTGTTTTTCCATAACTATAATTGCTGGTACCAACCTAAGCAAAGGTACTAAACAACATTTTATTTTTCGTAGGATGAAGAAGATATTGGCAGTCCACTACGCTCTGTCCGCACTCAATGTGGAGAAAAGCGCAGAAAGAAATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020175343.1	1.7e-17	replication protein A 70 kDa DNA-binding subunit B-like
Swissprot	Q9SD82.1	2.6e-10	Replication protein A 1B
trEMBL	A0A7N2L7T7	5.2e-16	TIR domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G08020.1	28.57	4e-11	66.6	ATRPA70B;RPA70B	RPA70-kDa subunit B

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC1G07106	AT5G08020.1	161	110	4	13	170	166	324	28.57	4e-11	66.6
AfisC1G07106	AT4G19130.1	161	111	3	13	171	237	394	27.95	4e-09	59.7
AfisC1G07106	AT5G61000.1	161	110	4	13	170	190	348	28.57	3e-08	57.0

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08646.7	Rep_fac-A_C	Family	292	367	32.9	4.4e-08

Gene Ontology

Accession	Ontology	Name
GO:0006259	P	DNA metabolic process
GO:0050896	P	response to stimulus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network