result

Gene information

Detail information of AfisC2G02883

Location

Gene	Chr	Start	End	Strand
AfisC2G02883	chr2	441140189	441142015	-

Sequences

CDS

Protein

Gene

>AfisC2G02883
ATGGAGTTCCTTGAAGTGCAAGGGCTAATTGCTACTGATCCTAAAGGTGATTCCAAAACGGATGTAGTAGAAGTAGTGTCTTCGGTTTGTTCATATCCCGAATAACTTTTATGGATGAATGCTAGCATTGCATTATTGCTTGAAGAGCAGTGTTAGTATTCCAAGTGAGATTGCTATATAAAAAGTAAAACATAGTCTCAAGCCTCATCACATAGGAATGACTAAATCAGAAGATATGCGGCAGGGCCATGGTGTTCGCAGTCATCAGTAATGAGTATAAATCATGTTTCATTAGCTCTCTGCTGTGCGAGAAATATACTATAAATAAATTTATGTATAATCTATGGCAACACTCCATTTTGTTATCAGTAGGCAGATCAGATTACTAGAAACCAATTTTTTTTTTCCAACAAAAAAGAGAAACATTTAAATCAATCCTGTATCAAGTCAAATTAAAGTGTTAGGCTTGCACTGTAAAAATGATAAAAAGTGAGTAGATATCATTAATTTTGCTATATTCTCTTGTCTTCCTTTCTTTTTTGGTTATAAGCATGATGCGTCACAAAATACATTTGCTGCTTCCTCTTTTGCTTACAGGCATGACATCATTTTTTGCAATAAAGTTTGTATATATAATGAAAAGCTGCACGTTTGATCATGATCTTGCATTCAGGCTGCAATTTCCAATAATGGATAATAATATCAAACAGATGATACAGTTATTAAAAAAATTGTTACTGTACCTGAATGCCTTAATTTTGTTTTCATTGTGTATCAACTTATGTATTTGCTGTGTTGTTATACACGCTTCAGTTTCCATTTCATTTAAAATGTTGCAGATGGATAGTGTTTGAATCAAATTTGGAATGAAGTATAAAGTATTAATGGCAACATATAATCTAAAAGCACTCAAATATATTCACCTGTATCATGACCTTTACTAACACAAAGATGTGCTTCTCACTTTTATGCTTTGCTTTTCTTTTGCTTTTGGGGATTAATGGACAAAAGCAAATGAAAAGTTCAAAACAAACAGATTAACAAAAGTTGTTTTTTTGCCTCTTAATCATCTTGATTGCAAATTCAAACCATGCCCAATCCTTTTCATCTTTTTTTTCATAAGTCAATTTTGCCTCATAATTTGGTCTTCCATCTCTTTTTCAAGTTGCATGCTTCTCTTCCTATATAACTGTAACATTAACCATCACATTTTACTAATTCTTAGTTCATCTACCTTAGAAATGAGACTCACATTTTCTGATACAGACCTACGCTCTTCAAAAGTGGATGAACTTGTAAAAGAAGTTCAAAGCAAAGATGCATTCATTCCAGTATGCTATCTTTTTATTTCGATTTTCTATTCAAAATCTTTATTGCTTCGGTTATTATGTAATGAAAATGTGCCATATACAGGCAAATGGTACACGATGGAATCCAACAGAGGAGCAAATACAAATACTCGAAGAGCTATACAAAGGTGGAATGCGCACACCCAATTCAAAACAAATCAACGAAATAACCAAGGAGCTAGAAACATATGGAAGGATTGAAGGAAAAAATGTGTTCTATTGGTTTCAGAATCACAAAGCCCGAGAGAGACAGAGGCTTAAACGTAGCGCTGCTTTCCTCACACTCAATTCTACAACTCATGATCCTCTACTATCATTATTTTCTGGCGATAAATTAGGTGATGTTTTCATAAACTTCGTGAATTGTTCGCAAAAGGAGGAGTCGAAGAAGCGCAAGTGCAGAGAATGGGAGGCCGAAGGTTATGAAACTCTGAATCTGTTTCCACTGCACCCAGAGAACTTTAAAAGGAATTACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	KAE8100136.1	3.4e-30	hypothetical protein FH972_018063
Swissprot	Q25AM2.1	8.1e-29	WUSCHEL-related homeobox 4
trEMBL	A0A5N6RP75	2.4e-30	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G46480.1	44.44	2e-27	118	WOX4	WUSCHEL related homeobox 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G02883	AT1G46480.1	162	57	3	49	177	88	249	44.44	2e-27	118
AfisC2G02883	AT2G28610.1	71	25	0	46	116	3	73	64.79	1e-24	109
AfisC2G02883	AT5G59340.1	67	24	0	47	113	10	76	64.18	4e-22	100

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	50	109	67.7	5.2e-19

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008284	P	positive regulation of cell proliferation
GO:0009733	P	response to auxin
GO:0009908	P	flower development
GO:0009942	P	longitudinal axis specification
GO:0009943	P	adaxial/abaxial axis specification
GO:0009947	P	centrolateral axis specification
GO:0010067	P	procambium histogenesis
GO:0010078	P	maintenance of root meristem identity
GO:0010654	P	apical cell fate commitment
GO:0010865	P	stipule development
GO:0043565	F	sequence-specific DNA binding
GO:0048825	P	cotyledon development
GO:0051301	P	cell division
GO:0080167	P	response to karrikin
GO:0090451	P	cotyledon boundary formation
GO:1902459	P	positive regulation of stem cell population maintenance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network