result

Gene information

Detail information of AfisC2G04185

Location

Gene	Chr	Start	End	Strand
AfisC2G04185	chr2	690197552	690198751	-

Sequences

CDS

Protein

Gene

>AfisC2G04185
ATGACAGAGTTCAACATCATCTTCAACGACTTGAGTTATGAGATAGAGAAGTCCAAGTTGAGCAACAGGATATCTAATGATGATCAGAAGAAAGAATCAAAAGGCGAAAAAAGAAATAAGAGGAAATTACCAATGAACAAGGAAAAAACGGTCTTAACATTTGAACAAGTATCGAAGTACTTTTACTTGCCAATATCGCAAGCAGCGAAAGAATTAAACATAGGTCTAACTCTTTTGAAGAAGAAGTGCAGAGAGTTGGGAATTCCTCGGTGGCCTCATCGTCAAATGAAGAGCATGCAGACTCTCATAAGGAATGTTCAGGTTATACATATTTTTAGTTCAATATTGTTGTGCTTTATTGTTTTTTTCCAGTTTGCCCATATAGAACATGTAAGTTACTATTGACAAAGAACATGAATTGATTCCTCTTAATTAATCTATCTATGACTGCTGTATAAATTTGCTGACTTGTGTGATCTAATTAACATACATAGGGAATTTAACATAATTATGGTTGGGTCAGGGTTTCGATTGTAGAATGCAACTGTTGAAGTTAATGAACTGATTTTAGATGTTAGTATTATCAATCAACCGAAGTATTAATATGCGGAGAACTGTTGAATGCCTGCTACACACACATACATATATACATACATATGTATGTATGTATGTATGTTTATATAGTTAAACAGTCACTATATAGTGTAATTGCATATGCAGGAACTAGAGAGAGAGGATGGAGAAGTAGGAGAAAAAGAGATGAAAATCGCGATAGAAATACTGGAGCAGGAGAAGAAATTAATGGAGAAAGAACCAGGAATCAGAATGGAGGAGAAAACAAAGAGGTTGAGACAAGCATGTTTCAAGGCTAATTTTAAGAAAAGAAGACTGCAGAATCACTTTGTATCAGTCGACACTCCTGATCATATTCTTCAACAAAACCCTACAGCTGATTCAGATGTCAACGGTTACATATATGGTGGTGCTCGTCAATGTTCTTATTGATACCATAAGGTCGATGAACTATTTTTGCAAGTCCAAGTCCGTCAGTGTGTGTTATTTGATGCATAGTTTAAAACCTAGTTAGTGAATCTTCAGATGTTACGATGGTTCAACCAGCTAGATTGTCAAACCATGTTGATCATTATCTTTAAATTTTCTGATTTAAATATGAAATTATTTCACTTAATGTTAGAATTT

Functional annotation

Database	accession number	e-value	annotation
nr	OAY79221.1	1.3e-43	Protein RKD1
Swissprot	Q9CA66.1	2.8e-30	RWP-RK domain-containing protein 2
trEMBL	A0A199VQN9	9.5e-44	Protein RKD1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G18790.1	62.83	5e-37	150	AtRKD1;RKD1;URP5	RWP-RK domain-containing protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G04185	AT1G18790.1	113	42	0	51	163	127	239	62.83	5e-37	150
AfisC2G04185	AT1G74480.1	109	46	0	50	158	133	241	57.80	6e-34	140
AfisC2G04185	AT5G66990.1	111	48	1	55	164	162	272	55.86	8e-33	136

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02042.12	RWP-RK	Family	52	98	75.7	1.8e-21

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009793	P	embryo development ending in seed dormancy
GO:0051302	P	regulation of cell division

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network