result

Gene information

Detail information of AfisC2G04457

Location

Gene	Chr	Start	End	Strand
AfisC2G04457	chr2	734043766	734045252	+

Sequences

CDS

>AfisC2G04457
ATGTTTGTTTTTCTCATCACTAAAATAGTTCGTAGTACATTTTCATCCCCAATATCCAGAAAAACTTGTGAACAATCTGTAAACTATTCATCAGTTTCACAAATTCATCAAAATCGAATCATAAAAGATTCGCTATCAGCAATAGAGAATGATTATAATACGTCGGTTACCAACCTTCTTAAATCTTATGGTTTCACTGATCATCAAGTAGCAAAAATCTTCACAAAGTTCCAAATTAACCTCAAATATAATCCGACAACTGTCCTTAAACCTAAGTTAGATTTCTTCCTTGAGGTTGGTTTTTCTAGAACTCAATTGGCAAAGTTCATTTCTTCAAATTCCCCTATATTGGAAACAAGCTTGGAGAACCGAATAAAGCCAAACATACTTCTACTTAAACCCTTCTACGAAACCAAGGAACATTTAGTTCGTGCTCTTTTTTCCAGCTACAACTTACTGCAGAGCAAACTAGAAACCAGTTTCTTTCCCAATGTTGGAACTTTAACAAGTCACGGAGTTCCTCATACTAATATTGTAAAGTTAGCCAGCCAACATCCAAGATCGCTACTGATGCTACCAAAAAAGTTTGAGAAGATGGTCCAGTTAGTTGCTTCTAAGGGATTTGATCCATGTTCTAATATGTTTTGCATAGGGCTTCATGTCGTTTCTACAACAAGTTCGTTGACATGGAGCGGAAAAGTGAGTTTGTATAAGAGTCTAGGATGGTCCGAGAATAATGTTGTCTCTGCCTTCATTAAACATCCATGGTGCATGGTTGCTTCAGAAAAGAAGATTAAACGGACAATGGATTTTTTTGTTAACACAAGGCAATGTGAGCCATCTTATTTGGCAAAAAACCCAGTGCTTATCAATTTAAGTTTGGAGAAGCGCATCATGCCAAGATGCTTCGTTATGGATATACTTGTGGAGAAGCAGTTGGTTAAGAAGAGTACTGTATACCGATATTTGATAAGCAACGAGGATTTCTTGGAGAGGTACGTGGTGCCTTATCAAGATCAGGTACCTGAGGTACTTCATGCTTACAATAGTAGTTATTGTTTCCCCTCTATAGAAAACAAATCTCAGAATTCATAG

Protein

Gene

>AfisC2G04457
GTTGGGTTCTTCTCAGATCTCATTACACATCAACTAACGGAGAGAACAAAACCCTAAAACTGTAAGTCTTGCTTCACTAAACCATTTATCTCATATCATTCAGCTGCAAAAATGTTTGTTTTTCTCATCACTAAAATAGTTCGTAGTACATTTTCATCCCCAATATCCAGAAAAACTTGTGAACAATCTGTAAACTATTCATCAGTTTCACAAATTCATCAAAATCGAATCATAAAAGATTCGCTATCAGCAATAGAGAATGATTATAATACGTCGGTTACCAACCTTCTTAAATCTTATGGTTTCACTGATCATCAAGTAGCAAAAATCTTCACAAAGTTCCAAATTAACCTCAAATATAATCCGACAACTGTCCTTAAACCTAAGTTAGATTTCTTCCTTGAGGTTGGTTTTTCTAGAACTCAATTGGCAAAGTTCATTTCTTCAAATTCCCCTATATTGGAAACAAGCTTGGAGAACCGAATAAAGCCAAACATACTTCTACTTAAACCCTTCTACGAAACCAAGGAACATTTAGTTCGTGCTCTTTTTTCCAGCTACAACTTACTGCAGAGCAAACTAGAAACCAGTTTCTTTCCCAATGTTGGAACTTTAACAAGTCACGGAGTTCCTCATACTAATATTGTAAAGTTAGCCAGCCAACATCCAAGATCGCTACTGATGCTACCAAAAAAGTTTGAGAAGATGGTCCAGTTAGTTGCTTCTAAGGGATTTGATCCATGTTCTAATATGTTTTGCATAGGGCTTCATGTCGTTTCTACAACAAGTTCGTTGACATGGAGCGGAAAAGTGAGTTTGTATAAGAGTCTAGGATGGTCCGAGAATAATGTTGTCTCTGCCTTCATTAAACATCCATGGTGCATGGTTGCTTCAGAAAAGAAGATTAAACGGACAATGGATTTTTTTGTTAACACAAGGCAATGTGAGCCATCTTATTTGGCAAAAAACCCAGTGCTTATCAATTTAAGTTTGGAGAAGCGCATCATGCCAAGATGCTTCGTTATGGATATACTTGTGGAGAAGCAGTTGGTTAAGAAGAGTACTGTATACCGATATTTGATAAGCAACGAGGATTTCTTGGAGAGGTACGTGGTGCCTTATCAAGATCAGGTACCTGAGGTACTTCATGCTTACAATAGTAGTTATTGTTTCCCCTCTATAGAAAACAAATCTCAGAATTCATAGTTCCAGCATATCTGCGTATGTTCTTAATTTTTCGTGGGTTGGTCTTTTTCCATAAAGTTCAAACAAAGTTGCAATTTTGTGGGCTGTTGCCATTTATCACCTGGAATCTTACCAAGATTTAAGCTGTTCAATATTGTTTCATTGCTCCTTCACAAAAAACGCATATTGGTAAGAGATTGTAAGTCATTTGAACTATATTGAAGCCAAAGTGTGCTTTATGACTATGTAATGTTTCATTTTATTTTATTTTTCTGGAAGAATATAGTTATGGCATCTCCGAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_019701790.1	7.6e-58	transcription termination factor MTERF2, chloroplastic isoform X1
trEMBL	A0A6I9Q933	5.5e-58	transcription termination factor MTERF2, chloroplastic isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G07900.1	34.68	2e-48	189		Mitochondrial transcription termination factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G04457	AT5G07900.1	297	191	3	55	348	103	399	34.68	2e-48	189
AfisC2G04457	AT1G21150.1	299	203	1	55	350	90	388	31.10	7e-39	158
AfisC2G04457	AT5G64950.1	308	210	2	55	354	73	380	29.22	6e-31	131

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	58	267	73.5	1.3e-20
PF02536.11	mTERF	Family	231	324	44.5	8.6e-12

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15032	MTERFD; mTERF domain-containing protein, mitochondrial	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network