result

Gene information

Detail information of AfisC2G05712

Location

Gene	Chr	Start	End	Strand
AfisC2G05712	chr2	941802793	941804676	-

Sequences

CDS

>AfisC2G05712
ATGTTAGGATACCGGGTTTTTCAAACTTTTCATCCGTCTCGCCAAATAATAACACCTATGGATAGAGGTCATGATCCAGTTTTCACCACTTCTCAATTAGTTCAACCAATCGAGGAGGAAGAAGAAGAATTCGATTTGAATTCAAATACAAGCGAAGAAGGTTCAGCATTTTCACCAAACGAAGATTTTTTTCATGCCACAACCCAAACAGAGAATCAAGCTCTTGAGCTTTTGAGTTTGCTTACACTCTGTGCAGAATCTATCAGCATGGAAAATCATGCAGCTATAAATTGCTTCCTTTCTAGACTAGGAGAGCTCGCTTCGCCCAGAGGCTCAACTATTCAAAGACTAGTAGCATATTTTGCAGAAGCATTAGCATTGAGAGTAGTCAAACTCTTTCCTCATATCTTTTCTATTTCACCTCCTAGAGACATAAGCGATGAAATCGACTATGAAGATGATTGCCTAGCACTTAGAATTCTCAACCATGTTAGCCCAATTCAAAAGTTCATACATTTCACTATCAACGAGAGACTACTCAAAGCATTTGAAGGAAACGATAGAGTTCATATCATAGATTTTGACGTAAAAGAAGGCATCCAGTGGCCAAGTCTACTTCAAAGTTTAGCTTCTAGGCCAAACCCTCCAACTCAAGTTCGTATCACAGGCATCGGGGATTCAAGGCAAGATTTGCAAGAAACGGGCAATAGACTTAAACACATAGCAGAGTCACTGCATTTGCAATTCGAATTCCATTGTGTGGTGGATCGTTTAGAAGATGTGAGGCTTTGGATGCTTCATGTGAAAGAAGGAGAATGTGTAGGCGTAAATTGCATATCTCAACTGCATAAAACACTATACAATGAGAATCAAAGTGGTCTTATGAACTTACTTGCTTTGATTAGAAGCACGAATCCTTCTATTCTTTTAGTGGCGGAGGAAGAAGCAGAGCATAATGATCCTAGGTGGGAAGTGAGGTTCGGTAATGCATTGAAGTATTACTCTGCTATATTTGATTCTCTGGATGCTAATTTCTTGCATGAAGATAGTATTTTGA

Protein

Gene

>AfisC2G05712
TTCATCTCAGCCGTCCGATTCCCAAAATGACGGTTATCTAAATTATCGTTATAAAGCCCTGCAGTTAAACTCTTTCTCATTTTTTTCACCCGGGCTTTTTTTCCTTGAAGAAGTTGCAGCAAAGCAAATGGAAGGAGACGAAGGGAGGAGGAGAAATATTTGAAGATTATTCTTTTTTTATTTGATTCATTTTTTCTTGTTTCATATTATTCATTTTTATTTGATTCGTTTTTTGTTGTTTCATATTATTTGTTTTACTCAACTGACCAATATTGAACTGTTTAAAAATTAGGATCTTGGGCTTTTTGTTTATTATCAGTTGTGCTAATTTGCGTGCTTCTTGTTTTTGTAGGTTATTTGGACTTCTGGAAGCTAAGGATTTCTTCTTGAAGGCAATGGAGATCATAGAAGGTGAGCAATTGATTCATTTCTTTGAACTTTATACAGAATTTAGACGAAGTTTTAACTTTCACTATTATTTTAGGTGCTGAGATTTGTTGGAGAATGATTCAATGAAGCTGATTGGTACTTGGATCGAATTCGTTAGTTTCTGGCTTTGAAAATTTGGTATGATTGCAAGTCACGAATATCATATTTTGTGAATATACGTAGTATGATAAGCACTGATCATGTGTTATTTGTGAAAATGTGCAGCCTAAAGGAAGAAAGCCCCAATGGTTCTATGATATGGATTAATATACGACTAACTTCCATTTAATTCATTCATTTCATTCAATTTAAAGAAGATTCCTGCATTTGTAGAAGAAACAGAAGATGATTACTCTATAAATGAAAAGGATTTATACACAAGCTAATCAAAGATAACAATGTTAGGATACCGGGTTTTTCAAACTTTTCATCCGTCTCGCCAAATAATAACACCTATGGATAGAGGTCATGATCCAGTTTTCACCACTTCTCAATTAGTTCAACCAATCGAGGAGGAAGAAGAAGAATTCGATTTGAATTCAAATACAAGCGAAGAAGGTTCAGCATTTTCACCAAACGAAGATTTTTTTCATGCCACAACCCAAACAGAGAATCAAGCTCTTGAGCTTTTGAGTTTGCTTACACTCTGTGCAGAATCTATCAGCATGGAAAATCATGCAGCTATAAATTGCTTCCTTTCTAGACTAGGAGAGCTCGCTTCGCCCAGAGGCTCAACTATTCAAAGACTAGTAGCATATTTTGCAGAAGCATTAGCATTGAGAGTAGTCAAACTCTTTCCTCATATCTTTTCTATTTCACCTCCTAGAGACATAAGCGATGAAATCGACTATGAAGATGATTGCCTAGCACTTAGAATTCTCAACCATGTTAGCCCAATTCAAAAGTTCATACATTTCACTATCAACGAGAGACTACTCAAAGCATTTGAAGGAAACGATAGAGTTCATATCATAGATTTTGACGTAAAAGAAGGCATCCAGTGGCCAAGTCTACTTCAAAGTTTAGCTTCTAGGCCAAACCCTCCAACTCAAGTTCGTATCACAGGCATCGGGGATTCAAGGCAAGATTTGCAAGAAACGGGCAATAGACTTAAACACATAGCAGAGTCACTGCATTTGCAATTCGAATTCCATTGTGTGGTGGATCGTTTAGAAGATGTGAGGCTTTGGATGCTTCATGTGAAAGAAGGAGAATGTGTAGGCGTAAATTGCATATCTCAACTGCATAAAACACTATACAATGAGAATCAAAGTGGTCTTATGAACTTACTTGCTTTGATTAGAAGCACGAATCCTTCTATTCTTTTAGTGGCGGAGGAAGAAGCAGAGCATAATGATCCTAGGTGGGAAGTGAGGTTCGGTAATGCATTGAAGTATTACTCTGCTATATTTGATTCTCTGGATGCTAATTTCTTGCATGAAGATAGTATTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241359.1	1.9e-130	protein DWARF AND LOW-TILLERING-like
Swissprot	Q9CAN3.1	1.7e-91	GRAS family protein 8
trEMBL	A0A8K0IJM7	8.6e-109	Protein DWARF AND LOW-TILLERING

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G63100.1	60.57	5e-95	344		GRAS family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G05712	AT1G63100.1	279	107	3	75	352	272	548	60.57	5e-95	344
AfisC2G05712	AT2G01570.1	293	164	8	70	352	214	491	35.49	8e-46	181
AfisC2G05712	AT1G14920.1	291	165	8	70	352	162	439	36.08	7e-45	177

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03514.11	GRAS	Family	78	346	297.0	1.7e-88

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009938	P	negative regulation of gibberellic acid mediated signaling pathway
GO:0010187	P	negative regulation of seed germination
GO:0010218	P	response to far red light
GO:0044212	F	transcription regulatory region DNA binding
GO:0033206	P	meiotic cytokinesis
GO:0042176	P	regulation of protein catabolic process
GO:0042538	P	hyperosmotic salinity response
GO:0043565	F	sequence-specific DNA binding
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:1902578	P	single-organism localization
GO:2000033	P	regulation of seed dormancy process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network