result

Gene information

Detail information of AfisC2G06116

Location

Gene	Chr	Start	End	Strand
AfisC2G06116	chr2	1001513143	1001514484	+

Sequences

CDS

Protein

Gene

>AfisC2G06116
ATGTCATCATCGTCCTCCTCCCCATGCGCCGCCTGCAAGTTTCTGCGCCGAAAATGCACCTCTACATGCATATTCTCCCCCTACTTCCCGCCGGACCAACCCACCAAGTTCGCAAACGTCCACCACGTCTTCGGCGCCAGCAACGTCTCCAAGATCCTCAACGACCTCCCCGCGTCCCAGCGCGAGGATGCCGTCAACTCCCTCGCCTATGAAGCCGAGGCCCGAATCCAAAACCCGGTCCATGGCTGTGTGGCCGCCGTTTACAACCTCCAGAGCCGCATCAGGCAGATCCAGACCGAGTTAGAAAACGCCAGAAAGGAACTCTCCGCTTACCTGGGCGCCGCCGCTTTCACCCCTTTCCTCTCTCCCTACGTCCCCCGGTTCACCAACTACAGAAGTGTTCCGGTGAATCCTGCCCAGCAGCAGATTGTGATCAAGGAGGAGCAGCATCAGCCGCAGTACGATATGCAGCAGCAGATGGCAGGGGCCATGGAGGCAGAGGCGGCAGCTGCGAGCAAGCATGAGATGATGATCGGGACGCATGTGGGCGGGTCGGGTACAGTGCATGCCGGACCGGGCCTGGGTATCGATGATGGGTTTGGTATTGGGAGTCTGAATGAGTTGCAGATTCAGGTGCCCCCGCAGTATATGCACCAGAATTTGTATGGGCAGGAGCATGACGGCGCTATGAACGACAACGGCACGAGTGGTTGAATATGCTCAAAATTTTGTGGTGAACTTTTCTTCTCTTTCTTTTAATTAGGGTTTATTTTTGTTGTTGTATGCCATAGTGATCTTTTCTTCTTCTTTCTTTTAACTATGCTTTGTTTTGTTTTTGTACCATGATAAACTGGGGTAAATGTTCAAGCGTAACCCTTGATCAACTCCTTGAATATTACCTATGGTTTAGAAATGATACAAAAATGCAACAAAACCTGAAGCAACTATGTTTCCTTTTTACTCTATATTAGCATATAGATCTCTTTGTTTCTTGAGGGCCAATGTCATAGTCTCTATCATTCAGGCACATTTTTGTTTCCAAGGTTCTATCCAACTGTTAAAACCGTCTCAATTTATATTGAAATTTTACTTCTTGAAAAACAAAAAACGAAATAAGGTAAACAAGCTACAGCCGGTGGAATTAAACTTGTTCATCAATTTGCTCTGATTAATGGCTGAGATTGTTTGTGGCACGAGAGACAGAGAAAAATGGATTAGTGGATTTGATCTACATCGGAAGTTAAAGTGAATCTGTATCAATCATAGTTTCGAAGATAAAACTGTAAGTCAAACCGTTCTGTATCAATCATAGTTTCGAAGATAAAATTGTAAGTCGAACCGT

Functional annotation

Database	accession number	e-value	annotation
nr	PWZ22396.1	5.9e-43	LOB domain-containing protein 36
Swissprot	Q9FKZ3.1	2.8e-42	ASYMMETRIC LEAVES 2-like protein 1
trEMBL	C0P4U0	4.2e-43	LOB domain-containing protein 28

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G66870.1	61.03	1e-45	179	ASL1;LBD36	ASYMMETRIC LEAVES 2-like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G06116	AT5G66870.1	136	47	1	3	138	2	131	61.03	1e-45	179
AfisC2G06116	AT3G27650.1	114	41	0	1	114	32	145	64.04	6e-41	164
AfisC2G06116	AT2G23660.2	121	46	1	5	125	2	120	60.33	2e-40	162

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03195.11	DUF260	Family	8	105	138.3	8e-41

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0016020	C	membrane
GO:0005739	C	mitochondrion
GO:0005654	C	nucleoplasm
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009536	C	plastid
GO:0009799	P	specification of symmetry
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0009944	P	polarity specification of adaxial/abaxial axis
GO:0009954	P	proximal/distal pattern formation
GO:0009965	P	leaf morphogenesis
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0048441	P	petal development
GO:1900150	P	regulation of defense response to fungus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network