result

Gene information

Detail information of AfisC2G08452

Location

Gene	Chr	Start	End	Strand
AfisC2G08452	chr2	1390195106	1390198199	+

Sequences

CDS

Protein

Gene

>AfisC2G08452
ATGCAATTGGTACGTGGAAAGCAATAGGTCATAAAAAATCAAATTTGCATCAGTTATCACCAACATCCGATGCAAATAGTTTCAATTCCCGCCATCCCAAATTTCTGTGCCACTTATTTCCCATTAGTTTCTTTTAGGATTTCGCCTCCTCCAAAACAAAAAAAAAGAACCCTAGAAATTATTTTCACCGCTTCTCATTACACAAAATCAAAAAGGCAAAGAAAACCAACAAAAAAAACAATTACAGCATCGGAGATTGGTTTTCAGTTCCGGATCTTATGAAGTTTGTCTCGGTGAAGTGATAATAGCTTTTTGTTAGCAAAGGCAATAGTAGTTTTCAAGGCTAAAGGAAAGGTTTTTGCTGGTGTGTGGCATATATAATAGCGTTATGTGGTATATATGTTAAATTAAAGAGCTTGAATTTGTACTGTAAATAAGATCCATTTTAGTTTTGTATATATGAACAGGCAAGGCCAGTTTTATCGCAAGCATTATCAGATGGAAATTACGATGAATTGGCGGATCCAAGACTTGAAGGGAACTACGATCCTATGGAGATGGCACAGATGGTTGCTTGTGCTGCTGCAGCAGTTCGTCACTCTGCAAGGAGACGCCCTAAAATGAGTCAGGTATATGATAAAACTTAAGCAATATCATCCCTTCTAAGAGCATTTGGCTTGAGAAGGAAACCTATTCCAACACCCAGGTGTTGTTAAAAACATATTACAAAAATAGATCTGATTTTCACCAAATCTGCATTTTGTGCTTCCGCGCTTTGATAGTTGGAATAGGTTTTATTTTTTTTGTTTATTTTCCTCAAGCCTAATACTAAAATTTGTCTTGTAGAATGTCTACATGTTTCCATAATAGTAGTGATAATTATCTCAAACAGAGAACCACCTTTGTAAAAGAACTGTAAATAACTGAGGTAGGGCTCTTTCCTCATCTGACCATTACCTACATCCATGTGAACTCCAAAATAAGGTCAATGACTAGTTGTAAATTGATAAGGTCTTCAGATCCTGAGTTCAATTTGTATTTGTATTTTTTTTGGACCCTGGACCTGAATCCTTTACATATCCATAAGAAGTAAAGAATGATTAAGGTTAGTAGCCATTGGGATTATATGAAATGTAAGAAACCTAAAGGGATTCTAGAAAAGACAGATCACCACTGCAGGAACTTTTTTGTAAAAATGATTCATTTCAAAATTTATGCATAGAGAGTGAAGCAAGATTTTTTATGCTTCAACTAATAAAGCCATATATATTCAGAGGTTACTGTTGATGTAATAAAGCCATACATCGGAGATTGGTTTACTGTTGATGTAATCACATGTTAGTTTCATGAGAGATGTCCTTTGAGACTTTTACACACTTTAATCTAAATATAATGTCATTATTGCCCTATTTTAAGCAATTTTATATTTTGTCTTCATTCCATTCTCTTCAATATTGTTTTTTATTTATACATTTTGCTCATTCTATACTGGCATGGCTTATATATCATGTCCAAATATTTTGATGGCTTGTTCTTTACCTGAGAAGTGAATTTTCATTGCCTGCGATTACGGTCTGTTCATATTTAAAGAGATAATATGCATTACTTTCTTTATTTTAGGTAGTTGAATAAAGAATGATAGAGTATTACAAGTATGAGTTATGGAATTATGTCATCCACTTAAATTCTTCTCTCCATCCATGATGTATTTACTCAAGTGTGACGTGTCAAAGTAATATTTTTACAAAATTTTTGCCAAGTTTGTTTTATGTTCAAATACTGCAAACTAGGGGGTATGCTTCTATGATGTACCATATATCTTTAGTATATGTGATTGTTTATATACCTTCTCAATTTAGCAGATGCAAACTAAGGGGTATGCTTCTATGTTGCTGAAATGGTTTGCTGAAATCGAAGAAGTGCTGTGAAGTGGTGGTGACAGTTTTTTTTGAAGATGATGTGTTGAAGGTATCAATCTGGTGATGAAGCTGTGGATTTTGAACTGATGGCAGTTTGGTATAGAAGGGGGTTGGGTGGGCAGTGCTGATGTCAATGTGCAGTTATGTTGTAGAAGATGAATAAGGTATCGGTTTGGTATGAATTGTTGTATTTGATGATGGTCAGGTGATTCAGGTGCAGTATGCAATTAATAAAGCAGAACCGGGTAATAATTTGCTATACCAGCACCTATCTCTGCTGCAAGTTTCAACCCTTCTAAGGTAGCTTTCAGAATTGAAAATAATCCAAAATATTTAGAATATTTTTTCCATTTTCTATTTGAATGACTAACAAATTGTTCTGCTTGTTTGTTTCAGGATCCAGTGAGGTTTGTTCTAGCAGCAGGGATCGGAACACTTCTCCTCGTGTCTCTTATTGTACTTCGAATATATCCGGTACCTTGCATTTAAAATACACGTTAATATGAGATATATTTGTTAATGAGAATAATGTAATTAATTATGTTTCATATGAAACAGGGATGGAGTTATGTTGATGACAGGCTATTATCAGTAGTAATTCCATATGAAGAAAGTTAAATTCTTTTAGTAGTTAAGTTATCTTATTTTTATTAAAATAGTTTCATACAAGCAATGTATTTATTTGCAATCTACCCTTTTTTTAATCAGAGTTTCTTATATGGACCATTAGAGCCACGCAAAAAACTATGTTCTTTTTACCCTGAACCCACTTACTGTATTATTTCTTTCATTACTATTTCATGTTTTATGTTTTGTACATTCTAATCTATACTAACTACTATGTCCACTTATGAAGCAGTTTGGAGGATGGCAGTGAATGATGGTTGTATCAGTTTTACATTCCTAGAGAGATAGAAGAGACGATCGAAGAAGATTTAGACGACTGCCTGCACCAACCAGAGAAGAAAAGAAGGTTATCCGCCACTCAAGTACAGTTTCTTGAGAAAATTTTTGAGGTAGAGAATAAGCTAGAACCCGAAAGAAAAGTTCAGTTAGCCAAAGAACTAGGATTGCAACCTAGGCAGGTTGCAATATGGTTTCAAAATCGTAGGGCGAGGTGGAAAAACAAGCAGCTTGAGAAAGATTATGATGTGCTCAAATTAAAATACAAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252211.1	4.1e-33	homeobox-leucine zipper protein HAT5-like
Swissprot	P46668.1	6.4e-23	Homeodomain transcription factor ATHB-6
trEMBL	A0A5P1FEN5	3.0e-33	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G01470.1	78.87	3e-28	121	ATHB-1;ATHB1;HAT5;HB-1;HD-ZIP-1	homeobox 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08452	AT3G01470.1	71	15	105	175	66	136	78.87	3e-28	121
AfisC2G08452	AT2G22430.1	70	13	106	175	61	130	81.43	2e-27	118
AfisC2G08452	AT4G40060.1	70	15	106	175	58	127	78.57	1e-26	115

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	107	161	61.1	6e-17

Gene Ontology

Accession	Ontology	Name
GO:0001558	P	regulation of cell growth
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0009637	P	response to blue light
GO:0009651	P	response to salt stress
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009908	P	flower development
GO:0009965	P	leaf morphogenesis
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network