result

Gene information

Detail information of AfisC2G08588

Location

Gene	Chr	Start	End	Strand
AfisC2G08588	chr2	1414579599	1414581643	-

Sequences

CDS

>AfisC2G08588
ATGTTGAATCTGGATTTAAGCAGTGGAAAGTTATGGGCACAAGTTGCAACAGTATTTCTGCTCGTCACGTTCTTTGCAGTTGACATATATCACTACGTTGACGACAGTTCCACTCCGAGACTGACGTGGACGAGAAAGGCAGCGTTGGAGGCCGAGAGGGTGGCCGCTATCTACTGTTCTGATCATGGCAGAGCTTATACCGATGGAAATACTGACGTCAACGGTGTTCAAGTTTGTGAGTGCCATAACTGCTACAGCGGGGACAGTTGCGAGATTTTCAATCAGAGTTGTGTTGCCGATGCTACAGTTGGGGATGCACTGTTTCTAAGGAAGTACTGGATGCATCACAGAGAAAACATTGCAACATTAGTTTCCGGATGGCACAGAATGAGTTACTTTATTGGCAAAAACTTCATGTCTGAAGAACTAGAGAAACATATTAGGCTTCTGCACGAGAAAGTCGGCAATGCTAATGTGACAGGAAGACATATCGTGTTTGGACACGGAATAACTCAACTTCTAAACGGCGTAATTATCTCACTGTCACCAAATCTTACTGCTACCCCAAATGCTCCCATAAAGAAAGTTGTTGCAGCTGCTCCTTATTATCCTGTGTTCAAGAGCCAAACCAATTATTTTAACCATCCAGGATACCAGTGGATGGGAAATGCATTAGACTATGTAAATACAACTACTCCACAAGATTTCATTGTGCTTGTGACTTCACCAAATAATCCGGATGGTTATCTTCACAACAAGTCAGTAATCCCAGGTTCTTTAGCTGTGTACGATCATGCAACATATTGGCCTCATTATGCGCCAATAGAATACACATCAGACGAAGATATCATGTTGTTTACTCTTTCCAAGTACACAGGACACGCTGGCAGTCGATTTGGGTATGTTTGTTTATACTTTATGCAGACGCTATTCCATCTTAGATATGTTAATTTCTTATATCCATATTATGAATATCTGAAAATTTTATTTTTTAGGTGGGCTATTATAAAGGACAAGGATGTGTATGACAAATTAACAACTTATATAGCAACGAATACTGAAGGTGTTTCACGTGAAACACAATTCAGAACTCTAAAAATTATAAAAGACATTTTGGTACCCAAGGAACCACACGCTGACTTCAATGAATTTGGCTATTATACTTTACGGAGTAGATGGGTTAATATCACCCAACTTGTGAATTCAACTGATCGATTCTCCGTTCAAGAAATGGATCCTAGACATTGCAATTACTTTAATAGAACCAGAGAACCTGCTACAGCTTATGCATGGCTGAGATGTAACTGGGAAGACGAAGAAGACTGTGCAGCCGTACTAGAAGCTGGAAAAATCAACGCCCAAGGCGGTGTGAGGTTTGAAGCAAATAGTCGCTATGCTCGTCTCAGTTTGGTCAAGACATCTGATGATTTTGATCAATTGATGGATCGACTGAGTGTTCTTGTTCACACTGATAGGGCTAGTAGGAATACTTCGCTATACAATTACATAATTAATCAACAAAGATCGAGCGAGCGTCCTTTCATCTTTGATGCTGATCACTGA

Protein

Gene

>AfisC2G08588
ATGTTGAATCTGGATTTAAGCAGTGGAAAGTTATGGGCACAAGTTGCAACAGTATTTCTGCTCGTCACGTTCTTTGCAGTTGACATATATCACTACGTTGACGACAGTTCCACTCCGAGACTGACGTGGACGAGAAAGGCAGCGTTGGAGGCCGAGAGGGTGGCCGCTATCTACTGTTCTGATCATGGCAGAGCTTATACCGATGGAAATACTGACGTCAACGGTGTTCAAGTTTGTGAGTGCCATAACTGCTACAGCGGGGACAGTTGCGAGATTTTCAATCAGAGTTGTGTTGCCGATGCTACAGTGTAAGCATTATATTGAAAAGAATATCAATCAAAATATACCTACACTGTAATTAAGAAGACATGGTAAACCAATTATTTGCTTCGAAGAAAAGATTGTTGGCTGTTTCTTAACTCATAAGGATGGCATTAAACCTAAACATCGAACAAGTAGGTGTTCATTAGTATTAAATAAAATGAAGCATCGTGCGTTGACTTAAGAAAGTCGCGTACATTTATAATTTGATCCATCAATTACCCAACTTACTAACGTCCTTTATCATAATTTTAATCTGTTCACACGGATACAGTGGGGATGCACTGTTTCTAAGGAAGTACTGGATGCATCACAGAGAAAACATTGCAACATTAGTTTCCGGATGGCACAGAATGAGTTACTTTATTGGCAAAAACTTCATGTCTGAAGAACTAGAGAAACATATTAGGCTTCTGCACGAGAAAGTCGGCAATGCTAATGTGACAGGAAGACATATCGTGTTTGGACACGGAATAACTCAACTTCTAAACGGCGTAATTATCTCACTGTCACCAAATCTTACTGCTACCCCAAATGCTCCCATAAAGAAAGTTGTTGCAGCTGCTCCTTATTATCCTGTAAGTCACCAGTGGGTTATTCATTCTACATCTATTAAACATAATTTCAAAAGTATTCTTAACTTTTGTGCAAATATAAACACAGGTGTTCAAGAGCCAAACCAATTATTTTAACCATCCAGGATACCAGTGGATGGGAAATGCATTAGACTATGTAAATACAACTACTCCACAAGATTTCATTGTGCTTGTGACTTCACCAAATAATCCGGATGGTTATCTTCACAACAAGTCAGTAATCCCAGGTTCTTTAGCTGTGTACGATCATGCAACATATTGGCCTCATTATGCGCCAATAGAATACACATCAGACGAAGATATCATGTTGTTTACTCTTTCCAAGTACACAGGACACGCTGGCAGTCGATTTGGGTATGTTTGTTTATACTTTATGCAGACGCTATTCCATCTTAGATATGTTAATTTCTTATATCCATATTATGAATATCTGAAAATTTTATTTTTTAGGTGGGCTATTATAAAGGACAAGGATGTGTATGACAAATTAACAACTTATATAGCAACGAATACTGAAGGTGTTTCACGTGAAACACAATTCAGAACTCTAAAAATTATAAAAGACATTTTGGTACCCAAGGAACCACACGCTGACTTCAATGAATTTGGCTATTATACTTTACGGAGTAGATGGGTTAATATCACCCAACTTGTGAATTCAACTGATCGATTCTCCGTTCAAGAAATGGATCCTAGACATTGCAATTACTTTAATAGAACCAGAGAACCTGCTACAGGTATATGTTATGCATTTTACTTTATTAGGTTAATTAATCAAGTAGATGTACGAAGCAAAACTATAAGTTTGAGGCTAACTAGTATCTAATATTTAACCGATTAATGGTAGCTTATGCATGGCTGAGATGTAACTGGGAAGACGAAGAAGACTGTGCAGCCGTACTAGAAGCTGGAAAAATCAACGCCCAAGGCGGTGTGAGGTTTGAAGCAAATAGTCGCTATGCTCGTCTCAGTTTGGTCAAGACATCTGATGATTTTGATCAATTGATGGATCGACTGAGTGTTCTTGTTCACACTGATAGGGCTAGTAGGAATACTTCGCTATACAATTACATAATTAATCAACAAAGATCGAGCGAGCGTCCTTTCATCTTTGATGCTGATCACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	AAF36437.1	5.4e-182	cysteine-sulphoxide lyase
Swissprot	P31756.1	5.5e-139	Cysteine sulphoxide lyase
trEMBL	Q9M7L9	3.9e-182	Cysteine-sulphoxide lyase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34060.1	38.40	9e-95	344		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08588	AT1G34060.1	487	252	10	10	489	5	450	38.40	9e-95	344
AfisC2G08588	AT1G34040.1	484	247	9	15	491	8	450	39.05	4e-94	342
AfisC2G08588	AT1G23320.1	417	225	10	81	487	5	380	33.81	1e-62	238

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04863.10	EGF_alliinase	Domain	42	97	69.4	2.3e-19
PF04864.10	Alliinase_C	Domain	99	302	294.4	9.2e-88
PF04864.10	Alliinase_C	Domain	331	487	197.7	2.3e-58

Gene Ontology

Accession	Ontology	Name
GO:0016020	C	membrane
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0008483	F	transaminase activity
GO:0009605	P	response to external stimulus
GO:0009793	P	embryo development ending in seed dormancy
GO:0009987	P	cellular process
GO:0016829	F	lyase activity
GO:0048364	P	root development
GO:0048366	P	leaf development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16903	TAA1; L-tryptophan---pyruvate aminotransferase	EC:2.6.1.99	Tryptophan metabolism	ko00380

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network