result

Gene information

Detail information of AfisC2G08602

Location

Gene	Chr	Start	End	Strand
AfisC2G08602	chr2	1417099214	1417100717	-

Sequences

CDS

Protein

Gene

>AfisC2G08602
ATGTTAATGGCGGCGAAGTCGACCGTAGAATCTCCCGTCTCTTCGTCCGAGGAAGAATCGTTCTCTCAGAAAAATCATCGATCGATGAATCGGAAGCGCGAGACTGAATCTGCAGTATCCTCCGAAGGCTCTTCAGAGGATGAAGAAAGTGATTGCTCAAAAGATTCGGATCCCAGGCCCAAATCCGTCAGCGAAGGTCCAGCTATAGATTTGAAGGAGTATGTTATTCCACAGCATTGTGTTTCTTCTGTTATACATTTATGTTTTTCCTAATCACTAAATTTTGACACATGTATTTCAGATTTCATACTTACTGTGTGCCCTTGGAGATGGTCACTTGATCAATTTCCAATTCAATATGACTACTGGTGAACTGTTTTATAGGAGGAAACTATCTCTTGGAACACAACCAATCACTCTTCGAACGTTTTCCTCAAAAGGCGCCAATCATGTATTTGCTGCATCAGATAGGCCCACTATGATATATAGCTGTAATCAAAAATTACTTTACAGTAACGTGAACTTGAAAGAAGTTAGTCATATGTGTCCTTTCAACTCAGCTACCTTACCGAACAGGTATTTACTTTATTATTACTATTACAAGTTATATTAGTGAGTTGCATGCACATTTGTTTGGTATTACAAACATGAGATAGTTTTGTCTAATTATTTTACCACACGCAACTGGCAGCTAGAACACTTGTCAGTGACCCAGTGCTAATGTATAATGCAAAGATGTTCTTGGTTCTGTTATAGAACAATAAGCCTTGTAGATTTTGTATATTTGTTGAATAGGAAAAATCATCACTAGGTCATTTTATTCTAGCATTATTAGATTTCCATAACCCATTCCTCGAGCTAAATTTGGCTTAGAATGTAATTTATATACGAAAACACACACACACACACAAAATTATTGCATTGAATGTTTTATCACCTGATGATGATACAGCCTTGTAATGGTTAAAGGGGACAAGCTCTTGGTTGGAACAATTGATGATGATATTCAGAAGCTTAACATTCATTCGATTGCATCCAATTTAACTTCATTCATATATTTTGTTCATTTTTTTAATACAAAATAGTAGGTAAATCCACTATGAAGGCTTTTTGTGAGTTTTTGACAGGGAAACTTGGTTTTACTGACAAGCCTGGACTTAGACAAGTATCTCAAAAGATTGAGGCTTTGAAAAGGAAATATTCTCGTAATCGCTTCTCCAAACAGCACGATTTGGAAATGAAAAAAATTGCAATTCAACTATGGGGGTCAGATGCAAATAGTAAGTCTTCTAAAAGAAAGTTTAGTCTGTTGGATGAAGAAATCAGGAAGTTGAAAACATACACATCAAGAAAGAAACCCAAATTTGAGAATAGTTTGGAAAAAGCAGAAGCTTTGGAGCTAAAAGTCAAGAAGCAGAAAATTTTGGAGCTGAAGGAGGAAATGAAGAAGATAGATCTGAACAGGGAGATCTTCAAGCTTTTTCTGGATAAGATGGAGGATTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_016476342.1	4.1e-07	PREDICTED: LOW QUALITY PROTEIN: DNA damage-binding protein 1-like
Swissprot	Q9M0V3.1	1.5e-09	UV-damaged DNA-binding protein 1a
trEMBL	A0A2G2W0Z9	3.0e-07	DNA damage-binding protein 1 (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G05420.1	75.00	9e-12	67.4	DDB1A	damaged DNA binding protein 1A

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08602	AT4G05420.1	44	10	1	71	113	617	660	75.00	9e-12	67.4
AfisC2G08602	AT4G05420.2	44	10	1	71	113	596	639	75.00	1e-11	67.0
AfisC2G08602	AT4G21100.1	35	7	0	74	108	621	655	80.00	2e-10	62.8

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003684	F	damaged DNA binding
GO:0005829	C	cytosol
GO:0016567	P	protein ubiquitination
GO:0005634	C	nucleus
GO:0006289	P	nucleotide-excision repair
GO:0009585	P	red, far-red light phototransduction
GO:0010100	P	negative regulation of photomorphogenesis
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0043161	P	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0080008	C	Cul4-RING E3 ubiquitin ligase complex

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network