result

Gene information

Detail information of AfisC2G08799

Location

Gene	Chr	Start	End	Strand
AfisC2G08799	chr2	1450605171	1450608080	+

Sequences

CDS

Protein

Gene

>AfisC2G08799
AGCTTTATTGTCATCATCCTCATCCTCTTCTATACATTTTTAGATATCTTGATTTGAAAAATAAGAAAGAAAATGAAGATACAGTGCGACGCGTGTGAGAAAGCAGCAGCAGTAGTGATATGTTGTGCAGATGAGGCTGCACTATGTGAGAAATGTGACGTTCAGATTCATGCTGCTAACAAATTAGCAAGCAAGCATCAAAGACTTCCTCTTCATACTCTTTCCAACAAGCTTCCTTTTTGTGATATTTGCCAAGTAACTTCTTTTACCTCATTTCTTCATCATTTTTTATTGTTGTTGTAAATTCACCCACACTAGTTCAGTGTTGTAATCCAAGAAATCATCTGCTTTGTAACAAATTTTTGTACCAATACAATACACCACGGATCTAATATTTGTGTGTTATATATATGTATACACGAGTGTTATGACACGAGTTTCGCGCGTGTACTGTTTTTCTTATAAATTGCATATGTTTGAATCAATCAAAAATAATGATTTTCAAACATCAGTAAAAAATAACGATTTTTTTATTTTCAAATGATATTAAGATTTGTGTATTTATAAAGAAGTATTTTGAATTGGTAAAGTAAATTTAATTTTAGATCCTATTTTTAGAAGCGTTTTAAATTTGTAAAGCATGTTTGATTGGTAGATCCTACTTTTAGGGACGTTTGAATTTGTAAAAGAAATTTAATTTGAATCCTATAACTATTATTATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACTATAGACCGATGGTTCATTTTTGTCGACTGTTATTATGCCATCTCATCTTTTATATGAATCGTTAGAAATTTGGAAAACCAATCGAAACTTGGTTTGCATCAATCTTTTACTGAATTATATCAGATATCATGATGATTCTCATGTATCATTTTAAAAGCTTCCATCCAGTAAAATGTGTGGTAAGTTAAAAAAAACTGCACTACACAGCCATTTACTTCTTTCGTAACCATGTAAGGCTATTAGCATATTCAGTGTACCTACTCTTAGTTTTGCATAATCACTGAATCAAATATATAATACAGATCCAGATATTCAAAACTGCTATGTTTAATGTTATGAATGTAACATTAGATTAGCTAGATAATACGATAGTTCACATACCTCTCCTCCTAATATTATAAGGTGTAAAAATGACCAATGTAATATTTCAGATGAACATATTGACCTACTCATGGATGTGCCATGGAAACATGTTGAAGAAAAAGTATAATCAACCATATACAACGATCACCTCTATAATTATATATTTTGTATTATAAGTAATGTAATTAAGCATTGTTAGGTTTTAAATTGTACATTGGTTTCCGCAATTTGTCTTTAGTCGTACGTCGTCTAAATATTTTTATGAGATGGGGCCTATAACAATTAATTTCTTTGGCTATTAGTTTAATTTGTTGCGATCATAACCCATGATATGTATGCTGCCACGTTACATTTATTTTTTCTTTTCAAATCAAACCTATAATTTTCTACTCGGAGGAATTCACAGTTGCTGTCTGCATTACCCTCCTAGTCTTTGTATCTTAGGATAAGCATTTACTTGGACCAAACAACATACTCTTTCAAGCGACGACCAATAACCTTTTAAAGATAGCGTCGACTTACTATGCACCTCAAAACCTTTTTTTCCTAATCATCTTACTGTATAAATTTCTAACAGGCATCAGTTTTAAAAGTAAGTGACACAAACATGTACATTAGAAGATGAAATGCATCGGGATAGGATTATCCTGACTTTTCAGATATAAAAGTGTTATAACACAGATTTCTTATCGAAACACTTAGGTTATGACCCTTCAGAGATAGTTTCTCTTTTAAAATTTTCAGTTATTTCATATATAGGACAAGGCAGCATTCATATTCTGCGTAGAAGACAGAGCTTTGTTTTGTCGTGACTGCGACCAAGCTATCCACGTTGCTGGAAGTCTTTCAGGCAACCACCAACGCTACTTAGCTACTGGCATCCGTGTCGGTTTGAGATCAATATGCAGCAAAGGTTCTGAAAAGATCCAGTCTGAACCCCCTAACCAGAATTTCGCACTCTTAGGCCACAAGATTTCCCTCCCTCAAGAACAAGTGTCTCCTTTCATGCCTTCTGCTTGGGCTGTTGATGAATTCCTCCAGCTCTCTGATTATGAATCTAACGATAAGGTACTAAAATACTCTTTCTCGAGTACCAAGTTGAGTGGTTATATATGTTAGAAGCATGTATGCATGCATCCCTTCATTTTTGTACACTGTACAGTGACTACAAAAAAGTATAAAGCATGACTGTGTATAATTAAGATGATATTACTCACATATTACTTACCCATCGTTTGTTTGTGTACTGCAGTTGAATAAAGGATCTCAAGCTGGATTTGGGGAGCTAGATTGGTTTACAGACATTGGTCTTTTCCAAGAAGAATTAGGTCCCAAAACAACAATGCAAGCAGCTGAAGTTCCAGAAATGCCAAGCCCACAAACAAGCAATGCTGCATATTTCAGAAACAGCAACAACAAATACAGCAACAGCATGATGTCTTACAACAGCAAAAGCATGCAGTACAACAAAAGGTCAAGGGTTGAGGTTTCTGATGAAGAGGAGTATTTCACGGTTCCTGATCTTGGGTAAAAGGTGAAGCACTATGTGTTTATGTTATTATATGTGTGCTATTGTATTCCTACATTTATCCATGTATCTATTTGCTAGTAGATATGTGCATAAATGAATGGATAAATCTAGATACATATTTTTTTGCAAATGAAGTTCTGCAAACTAGTATCGCCTGTGTAATTTGTTACTTTCTTGAATATGGTTAATGTTTGGCATGATAGTGGAGTTTATATTGTAGATTAATTTGGTAGCTG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010930223.1	1.4e-85	B-box zinc finger protein 24
Swissprot	Q96288.1	7.0e-63	Salt tolerance protein
trEMBL	A0A6I9RY52	9.7e-86	B-box zinc finger protein 24

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G06040.1	53.64	3e-66	248	BBX24;STO	B-box zinc finger family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G08799	AT1G06040.1	261	103	7	1	256	1	248	53.64	3e-66	248
AfisC2G08799	AT2G31380.1	260	100	9	1	256	1	238	51.54	1e-61	233
AfisC2G08799	AT1G06040.2	169	55	2	1	165	1	169	65.09	9e-54	206

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	53	95	29.0	8.1e-07

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003712	F	transcription cofactor activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0042802	F	identical protein binding
GO:0009651	P	response to salt stress
GO:0009741	P	response to brassinosteroid
GO:0009909	P	regulation of flower development
GO:0010100	P	negative regulation of photomorphogenesis
GO:0043565	F	sequence-specific DNA binding
GO:0048573	P	photoperiodism, flowering
GO:0080167	P	response to karrikin
GO:0090351	P	seedling development
GO:1902448	P	positive regulation of shade avoidance

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network