result

Gene information

Detail information of AfisC2G09123

Location

Gene	Chr	Start	End	Strand
AfisC2G09123	chr2	1514317126	1514318129	-

Sequences

CDS

Protein

Gene

>AfisC2G09123
TCAATGATGGTACCCACAATTAACATTTAATTTTTGACATAAAATTAATCGTATACCTAAACCTCGATCTAAAACGCATGCTAATCGAATGTTATTTGTTGAATATTACAACAGTAATCGATGGATTGAAGATGGAGCTGAAGCAATGTCGAAGAAGAAAACACAGTGTTGTAGAAGAACTATTCATGCCTGTTAAAAGCAGTAAAAGAAACGAAGAGAGCTCCGTAAAATCAAAAAATGATGTGTAAAGAGAAGATGGAATGGATGAGTTCTGCTCAGCTATGGAACGACAGTCATAGCAATTGCAGCGAAAGCATTGATAATACACACACTGCAAAGGTACAGACTTAATAATAATAACTATTACAAAGCTAAAAAATATTACGAATCTAAATTGGGGATTTTTGTAAATACAGAGTGGAGACGGAATAGAAACGGAATCGCTGTCGATATCAGAACGGAAAAGCGCTATTGTGCCTTTTAAGGAGGCGGATTTCTCTTTGGGTTGTGAAGCGGCTAAGGAGCAATGCCTTAGTTTACCTGCGAAGTCGAATGAAAGCAATAGATGCCATGTGTCAAGCGGAGGAGGTGGCCAGATGGCGGCGGTTTACGAGGCTCAGCAGGGGTTGAAGAAGGTGAGGAGGTGCTGGTCGCCGGAGCTTCATCGGTGTTTTGTTGCTGCCCTTCAACAACTCGGTGGTCCTCAAGGTAAAAATTGCATCTTTATTTTGAAATTTACAAAAGAAAGATGACTTTTTAAACCTTTTGTTATTTGTTTTGTAAATGCAGTGGCTACTCCGAAGCAGATAAGGGAACTGATGAAGGTTGATGGCTTGACCAACGATGAAGTTAAAAGACATTTACAGAAATACAGATTGCATACAAGAAGGGTAGTGCCAAATACGACAAGTGCTGATATGAATAGAAGCTCTTTTATGGTAACAGGAGATTTATGGACTAATGGTGAGAATTATACAAAATCACATCAATCTGGGTCGCCATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275529.1	2.9e-35	LOW QUALITY PROTEIN: myb family transcription factor EFM-like
Swissprot	Q5VRW2.2	2.4e-26	MYB-domain transcription factor NIGT1 homolog 1
trEMBL	A0A8K0IDJ6	5.8e-33	Putative transcription factor NIGTH1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G03500.1	38.67	1e-30	129		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC2G09123	AT2G03500.1	225	94	7	9	202	115	326	38.67	1e-30	129
AfisC2G09123	AT1G25550.1	196	93	5	4	194	120	299	41.84	2e-29	125
AfisC2G09123	AT1G68670.1	203	96	7	1	188	109	300	39.90	3e-29	125

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	109	160	28.8	8.9e-07

Gene Ontology

Accession	Ontology	Name
GO:0000160	P	phosphorelay signal transduction system
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005634	C	nucleus
GO:0009507	C	chloroplast
GO:0009736	P	cytokinin-activated signaling pathway
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0010629	P	negative regulation of gene expression
GO:0010638	P	positive regulation of organelle organization
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0032107	P	regulation of response to nutrient levels
GO:0043565	F	sequence-specific DNA binding
GO:0048449	P	floral organ formation
GO:0080022	P	primary root development
GO:1901699	P	cellular response to nitrogen compound
GO:0090701

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network