result

Gene information

Detail information of AfisC3G01178

Location

Gene	Chr	Start	End	Strand
AfisC3G01178	chr3	212600018	212602608	+

Sequences

CDS

Protein

Gene

>AfisC3G01178
CTGCTTTTCTCCACAGCTCTTTATATACAAGAGTTATTGAAGAGTGAGGTATCCACACAATATTCTCTCTACTTAACACAACAATACTTTTCTTTCTCTTCTGTAGTACCAGGATAGGAGGAGACTGACATAAATGAGGTATATAATTTTATCTTTGTAGTATGTGTGGCTGATAGCAGTTTTTATCTAATTTGATTATATATGTCTATGTTATTATGCTGTTGGTTTATCTTCTATGCTTGAATTGGATATTTGGTCAAGAAAGAAATAACAAAAAAGGGGAACTTATATACCAAATCTTACTTCATTTTTCCTGTGATTAGATGCGAGCAGGATATGCATAGCTCACTATCTTCTTAGACTTGTGCTGAAGCAGTGTATTTTGAAAGCAAAGAGATTAAAGTATTTGTAGCGCCAATGCCAGTACCTCTTGCTCCTTATCCTACACCTCCTGCTCCTGTCATACCTCCTAATGGTAGTTTCACAATATCATGTACTTATATAATGTTACAGTTTTTAATCCCCAGGTCCTGGATTGGACTTGTATAAATTCTGAAGAAATGTGATTATTTGCCTCCTGACTCGAAAGTCCGAACTCATAAGTTATTAGCTAGAGTAATCAAGTTTTTCGTCACTAACTTCTTACTTCATGTGAAGTATTTGTTTCAACACATTCACATTGTACTTCTATGAGAAAATTTCAAACCAGAACCATATAACTCGAATATGCTGTGGTATAGATATTGATGATGGTGTTTATGAACAGATCTATCTCTTCGTGAAACTTATTTTTCTGTTTATTCTTCATAATCTGTAGGTGCTGGTGCACAAAGCCAACTTGTGTGCTCTGGTTGTAGAAATCTACTTTTGTATCCACAAGGTGCTTCATCTGTTTGTTGTGCCGTTTGCAATGTAGTCACATCAGTGCCTCCACCTGGTAAATTCTAAATACACATTTTGGAGTCAGTTGTTTGTTTATTTATTTATTTTTATTTTTTGCACTTATTCAATTAGTGCTAACGTAAACTAAAAATAATAATATACATTGGTATTATTGCTATTTTCAGGCATGTGGTAGAAAGTAGTCTATATTTGCAAATAGCTCGGAAGCTAATTTAAAATTGAAATGAGTTTTCAAAAGTGTCATATTTTGATAAATTCTTCTTTTCTTTTTATAGTTCTTACGATGTTTATTTTTTAAGGTTCAATTAAAGCTCCACAGCTTGAAGTTGCATTTCACTTCATAATATTAGAGACTGATGTTCCTATTGAATGCTTCTGCAGGCACAGAAATGGCACAGTTGGTTTGTGGAGGCTGCCACACGCTACTGATGTATATACGTGGAGCAACAAGTGTGCAATGCTCGTGTTGTCACACTGTTAATCTCGCTTTAGAAGGTATTAAAACTTTTTTATCAGAAAAATATGTTTGTGTCAACCACACAGCGAATTCTGCACTATGAACTATAGAAGACTAAATTGCCTCTGCTGGGGTTAATGTTGTTATTTACCTTATTAGGAAACCCTAAACTAATAACACGATAACTCCAATAATCCAAACGCTGAATTAATTGATATTTATAATAATTTGGAAATGAAAGAAAAGAAGTGCTTTTAACAACACTTCTTTTTTCGTTCAAGTATTCAGCCTTCCCAAAGAAAAATCTTATTGGTCATTTCGACACAGATCCAGGTTTACACGTTCTTTTAGTGTACTGTGACTGAAAATAAGTGCACTAAACTATGGACTTCTTAACAAGAACATAATACATCAATGAATACTTAATGATTTGGGTGTATGTTTTATATTTACAGCAAATCAAGTAGCACACGTGAACTGTGGAAACTGTCATATGTTGCTGAGGTATCAATATGGTGCCAGATCTGTAAAATGTGCAGTTTGCAATTTTGTGACTTCAGTTGGGGTAAAAATTTGGAACTTCCTGCTTTTTAGATACATTTTTTACATTTTTCCCCGCAATCTCACCAATGCAGGATCAACTGTACTGTCCATGTTCACACAAATAATTTACGTAATTTCTTTTATTTTCTTTCTGAACAAGATGATTATACATTATTATCGTGGATAATGAAAAAACAAATATGGAACTAAAGCACAAATTCATCTCTTTTCCATTTTAGCTGCGTAAAATGTGAACATTCTTTACAAACTGAGACCTTCCCATGCACAAAGAAAAATTGATATTGAAAACATGTTAATAGTCGATCAATAACATGTTTTACCTGTTTGCAGGTTGCTCCAAGCCCGGATCAAAAGCCAAATATTTGATGTAAGAAAATAATTATATGATGATCGGTTTTTGAAATAATATCGAGGCAAGTTCAGTAGATATCCATATCCAGCATGTTTAGTTTCTGCTCAAAGAGTGTACTGTATAGAGTTTTCTTATTGTGCAATGAAGTAATGTATAAGCAGTTTTGTGTAGAACAAGAAAAGATTGTGGGGTTTCAAGCTAAGACTCATCTTGTACATGAATTTATTGTTTTGCATAACTTGTATATTCAGTAGTTCCTTGTTATAATTGTGCATGAATCACGTTTTGATGAAGCTGAGCGAAAATCAGTTTACC

Functional annotation

Database	accession number	e-value	annotation
nr	PON65512.1	8.6e-21	Zinc finger, LSD1-type
Swissprot	Q93ZB1.1	9.3e-20	Putative zinc finger LOL1
trEMBL	A0A2P5CWS6	6.2e-21	Zinc finger, LSD1-type

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G32540.2	82.73	3e-57	217	LOL1	lsd one like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G01178	AT1G32540.3	139	17	3	8	144	20	153	82.73	3e-57	217
AfisC3G01178	AT1G32540.2	139	17	3	8	144	20	153	82.73	3e-57	217
AfisC3G01178	AT1G32540.1	123	14	1	23	144	64	186	87.80	4e-57	216

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06943.9	zf-LSD1	Domain	29	53	40.7	1.4e-10
PF06943.9	zf-LSD1	Domain	68	92	47.2	1.3e-12
PF06943.9	zf-LSD1	Domain	106	130	42.1	4.9e-11

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001666	P	response to hypoxia
GO:0002240	P	response to molecule of oomycetes origin
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005576	C	extracellular region
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0008131	F	primary amine oxidase activity
GO:0009536	C	plastid
GO:0009862	P	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104	P	regulation of ethylene-activated signaling pathway
GO:0010310	P	regulation of hydrogen peroxide metabolic process
GO:0010602	P	regulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618	P	aerenchyma formation
GO:0016575	P	histone deacetylation
GO:0034051	P	negative regulation of plant-type hypersensitive response
GO:0034052	P	positive regulation of plant-type hypersensitive response
GO:0045595	P	regulation of cell differentiation
GO:0048364	P	root development
GO:0051568	P	histone H3-K4 methylation
GO:2000121	P	regulation of removal of superoxide radicals

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network