result

Gene information

Detail information of AfisC3G02097

Location

Gene	Chr	Start	End	Strand
AfisC3G02097	chr3	364264298	364265318	-

Sequences

CDS

Protein

Gene

>AfisC3G02097
AAAAAAAGAAAAAACACACTAGTTAAAGAGTGATAAAAATGGGAAGCATGAATCATTTGGACAGTGATGCTATGAATGTTTTCAACTGTGATCTTTATCCACAAATGCATGAAGGTACTTAGCAGCTAGTTAGTTGTGTACAATATGTCATATACGGCCTTCCTCCATTTTGTTGTTGTTTTCATATAAGAAATCATAATTATCAGAATATATATATGTGCTTTTATGAAGGTACTTAGCAGCTAGTTAGTTGTGTACAATATGTCATATACGGCCTTCCTCCATTTTGTTGTTTTCATATAAGAAATCATAATTATCAGAATATATATACGCTTTGGCCAGGTGAGAAAAAGAGCAGGAGGAGGAGAAAGAAGGCAAAGGCAGAAGAGGGAGAAAGCAAGAAAAGAAAGCTAAGCGATGAACAAGTAAAGTTCTTGGAGATCAATTTCGGTAAAGAGAGAAAATTGGATTCAGGTAGAAAGATGAGCTTGGCTTGTGAACTTGGACTGGACCCCAAACAAGTAGCTGTTTGGTTTCAGAACAGAAGAGCTAGGTGGAAGATCAAGCAACTTGAAGACGAGTACGCTCAAATCAAGTCTCGACTTGACGCTGCTTTAATGGAAAAATGTCATTTTGAAAACGAGGTATTCAATTCTTCCATTACTTTCATCATTATATACGATTAATAAATTTTTAACAAATGCTTCCTTTATTTGGGTTACAGAACACGAAAATGAAGAGGGAGCTGGAGGAGGTGAAGGAGCAACTGCAGATGCTCACTATTGAAAGCTCAAAAGGTGGAAGTCCAAGTTCGTCATCAACTGAAAACTATCATCCATCCTTTGGAGAATTTGGAGTACCTAATGACATCATGTACATAAATGATCAGTATAATTACATTATGGATTATTGCTTGTTTTAGATTGTGTTTTAGTTATTGATTAGCATGTGGATGACGAGTTCATGTAATTAATTGTTATGTGGTTTCCTAAACTAACAGAGATGGATGGTGAATGTGTTC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020574740.1	4.9e-32	homeobox-leucine zipper protein HOX12-like
Swissprot	O23208.3	3.0e-26	Homeodomain transcription factor ATHB-40
trEMBL	A0A843V188	3.9e-31	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G18550.1	46.63	2e-33	138	ATHB21;HB-2;HB21	homeobox protein 21

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G02097	AT2G18550.1	178	78	6	13	174	20	196	46.63	2e-33	138
AfisC3G02097	AT4G36740.1	202	93	6	4	186	1	197	42.08	7e-32	133
AfisC3G02097	AT5G66700.1	104	49	0	42	145	68	171	52.88	6e-27	117

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	45	98	56.3	1.8e-15

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0009536	C	plastid
GO:0009733	P	response to auxin
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network