result

Gene information

Detail information of AfisC3G03940

Location

Gene	Chr	Start	End	Strand
AfisC3G03940	chr3	704639983	704645265	-

Sequences

CDS

>AfisC3G03940
ATGGGAAGCAATCCATCAACTAAAACAAACAAAACAATGGAGTACGAAAACGACGAAGAGGAAGCAGAAAAAGAAATGTCTAAAGCAGAAGAATGCTACAAACTGAACAACATACTAGGTGCAAATAAGCACATAACAAAAGCCCATTCATTAAACCCGTCTCATCCAAATATAGCTAAGGTTATGGCAGCCATTCGGGTTCATGTTGTTGCACTGGATAAGCCACTCAGACCATCTACAGACTACTGGTGCAGGATACTTGGCTGTAACTCTACTGATGATCTTCAGACTATGAAACTGCAGTACAAGAAAATGTGCTTGCCTACTCATCCCGATAAAAACCCTTCTATTTGTGCTGATGAAGCATTTAAAATTGTATCTGATGCTTGGGAGGCTTTGTCCGCATCGCAGTCTCGGAATCAATCTAAGGATAACACTGAATCTGATAATTTCAGAAATACCAATTTTGGTGCTTCAAAACAACATAACCAAAGTGCAAGTTCATGCAACGACGATGGCGGTCAATATAATAAGACTTCATACAATGACTTTGAGTCCAATGATTCATCCACTAATTCGGATGCAAATTCAGAGAGTTCATCAGAAAATGGTGGTGAAAATTCCAATACTCACAGTCAAAGCTTTGCAGGAGACCATAATACTCATTCTTCAAAATATGATTACAAAACTCATTCTTCGAAAAATAATTTTTCATCCACAAGCAAGCCTAGCTTTTTTTATGATGGTAGTGACAATAATGCAGAATACGCTTTTGCTTCCAAGTTCAAAGGAAAGATTGACATGGAAAACATGCAAGCAACAACTTTAGTGCAAATGGTGTTATCATGGTCACTAAAGGACGTCTTCAAGAGAAATTTCTTTAAAGATGAGGTCAAAACAATTCCAAAGACTTTTACCTCTTTGAAGGAATATTTAGACTCGTTTACCAGCCCACTAACTGAAGAAGTGCATGCTGATCTATGTTCGAATCTGGAGACAATATCACAAGCACCTTATGTCAAAGTCGAATATATTGAGGAGCTATCAGCAGCACAATTGCAATACTACATTAAAGTTAAAAACCAGGACAAACATTTAGATGGCAAGGAAACGTACACACCAATCGAAGCTGATATGCTTGTTTTATCTGAATGCAAAATCAAACACATATCCGACCTCATGAAAAATGAAAAATCTTATGTAATTGCATACGTCTTAAAAGCTGGAAATGAGACTGACGTTTTATCACCAAACGAGCACATTATCAAAACAACCGAAAGATTTCCAATAGAGAAATATTTCAAAAAACAACTTGGAAAAGAACCGCAACAAATAAAACCTCTATATGCAGCTCACATTCTAACCATGATTACGTTCAATCGCATATGGAAATCACTCAATGAAGGTATGTCTGATCGAAGAAGTAATGACATTCTTAATAAGGTTTGGAATTATGATGTTCTGGCATCAGAAGGAGGTACTTCAATCTCATCATACTATGTCGACGACCTTGAAAAATTCAAGCTTAACAAATCTCAGTTTGATGCTGTAAAAGACTGCCTATCTACAATTTATGATCAAAATCTCAAAAGTACAACAATCAAGCTCATATGGGGACCTCCAGGTACTGGTAAAACTAAAACAATCAGTACTTTGTTGTACATTTTGCTTCAAAAGAACCATAAAACTCTTGCATGTGCACCAACAAACACTGCTATAAAAGAAGTTACTACTCGACTACTGAAATTAGTGAAAGAATCATTGAGTCAGAAGCACAGGCTTGGAGATTTGGCTTTGTTTGGAAATAGTAAACGAATGAAAATCGACAATGATCTTAGCGAAGTGTTCATTGAAGATCGGGTTAAAAGGTTACGAACAATTTTTGCGCCTCTAACAGGTTGGAGGCATCAACTTAGCTATATGCTAGATCTGTTTGAAAATGCAACTTCACAATATGAGCTGTATTTAAGAACTGTGAAGGAAAATGAAGACATTGAAGAGGGATCAATAAAAGTGCAAGAATTAACACTTAAGGAATATATTGTAAAACATTTCTTTTCACACGCGAAAGAGCTGTGTGTTTGTTTGACAACTATGTCTACAGATCTACCAAGAATTTCTATCTCTGCAAAAAACTTGGAAAATATGTGTTTGCTCGTAGAATTGGTTGATTCTTTCGGAAAATATTTGAAGTCCGTGAGAGTTACTAGCAACATGCTAATAGAAATATTCGAAGAATCGATTCTTGGAATGTTGAAGGATAACTTACTTAGGACAAATGATTACACTGATATGAAAAGCAAGTTGAGAAGCATGCGGTCTGATATAGTGAAAATTCTACGAGTCCTGTCCAGAACTATTTCTCTTCCCGATCTATGTAACAGAAGCTCAATACAAGAATTCTGCCTACAAAATGCAGTTGTAATAATTTGCACAACTAGTACATCCTTTAAATTACATAACGTGCAAATGGAAAAGCCGATAGAAAATTTGGTAGTTGATGAGGCAGCGCAGTTGAAGGAATGTGAGTCTTTGATTCCTTTACAGCTGCCTGGAATTCGCCATGCTATTTTTATAGGCGACGAACACCAATTACCAGCTTTGGTCAAAAGCAAGATAAGTGAAAATGCTTGCTTCGGCAGAAGTCTTTTTGAAAGATTGAGCTCTTTAGGACACAAGAAACACTTACTTGATGTTCAATATAGGATGCATCCTTCCATAAGCAAATTTCCAAATGCTAATTTCTATGATAAAAGAATTTCCGATGGTTCAAATGTGTTGCATCCTAGCTATGAGAAACAGTACTTGGCTGGAAAAATGTATGGCCCTTATTCGTTTATAAGCATTGAAGCTGGAAAAGAAACATCTGGTAAGAACGGAAGAGGGTGGAAGAACATGATAGAAGCTGAAGTTGTAGTGGCAATTATCAAAAGCCTTCATAGAGCATTCAGTACCAAAAAGGAAAAGATTGGAGTTGGAGTTATTTCACCATATACAGCTCAAGTTTCAGCTATACAAGAAAAAGTAAAGAAAACATATTCGACTACGGATAATGTTTCGGTTAAAGTTCAATCTATCGATGGATTTCAAGGAGGAGAAGAGGATATAATAATCATATCAACTGTGAGATCCAATAAAGCTGGGAATGTGGGTTTTCTTGATAAGCTTCAAAGGACAAATGTGTCTCTAACCAGAGCAAAGCATTGCTTGTGGATAGTAGGAAGTGGATCAACCTTGTTAAAAAGCAATTCAATATGGGAAAATTTAGTAAGAGATGCGATGAATAGAGGTTGCTTCTTTGATGCAAAAGATGACCATAGTCTGGATGCTGTTATTGTCAAGGCAGCCATTGAAAATGATGAACTTGATAATATAGTAAAAATGGACACACTCCGTATTCAAAAGAAAAATTGGAAGGACACTAATGGCCCCTCTCCACAGGTGTGCCACAGGTATAACACACCTGAAGGATGCAAGTTTGGTGCCAGATGTAATTTTTCACATGGTGAAACAAGTCGGAACATAGTAGGCAGAACTGCAACAAATGATCCAGGCTTGGATATGAAACCAACCACATCTACTTCTAACTTAAAGACAAAGCTCTGCAGGGAGTTTGCCAAAGGTTCCTGCATGTATGGTACTAGATGCAGTTTTGCTCATGGTTCAACCGAGTTGCAAAAATCATTTTTTTAG

Protein

>AfisC3G03940
MGSNPSTKTNKTMEYENDEEEAEKEMSKAEECYKLNNILGANKHITKAHSLNPSHPNIAKVMAAIRVHVVALDKPLRPSTDYWCRILGCNSTDDLQTMKLQYKKMCLPTHPDKNPSICADEAFKIVSDAWEALSASQSRNQSKDNTESDNFRNTNFGASKQHNQSASSCNDDGGQYNKTSYNDFESNDSSTNSDANSESSSENGGENSNTHSQSFAGDHNTHSSKYDYKTHSSKNNFSSTSKPSFFYDGSDNNAEYAFASKFKGKIDMENMQATTLVQMVLSWSLKDVFKRNFFKDEVKTIPKTFTSLKEYLDSFTSPLTEEVHADLCSNLETISQAPYVKVEYIEELSAAQLQYYIKVKNQDKHLDGKETYTPIEADMLVLSECKIKHISDLMKNEKSYVIAYVLKAGNETDVLSPNEHIIKTTERFPIEKYFKKQLGKEPQQIKPLYAAHILTMITFNRIWKSLNEGMSDRRSNDILNKVWNYDVLASEGGTSISSYYVDDLEKFKLNKSQFDAVKDCLSTIYDQNLKSTTIKLIWGPPGTGKTKTISTLLYILLQKNHKTLACAPTNTAIKEVTTRLLKLVKESLSQKHRLGDLALFGNSKRMKIDNDLSEVFIEDRVKRLRTIFAPLTGWRHQLSYMLDLFENATSQYELYLRTVKENEDIEEGSIKVQELTLKEYIVKHFFSHAKELCVCLTTMSTDLPRISISAKNLENMCLLVELVDSFGKYLKSVRVTSNMLIEIFEESILGMLKDNLLRTNDYTDMKSKLRSMRSDIVKILRVLSRTISLPDLCNRSSIQEFCLQNAVVIICTTSTSFKLHNVQMEKPIENLVVDEAAQLKECESLIPLQLPGIRHAIFIGDEHQLPALVKSKISENACFGRSLFERLSSLGHKKHLLDVQYRMHPSISKFPNANFYDKRISDGSNVLHPSYEKQYLAGKMYGPYSFISIEAGKETSGKNGRGWKNMIEAEVVVAIIKSLHRAFSTKKEKIGVGVISPYTAQVSAIQEKVKKTYSTTDNVSVKVQSIDGFQGGEEDIIIISTVRSNKAGNVGFLDKLQRTNVSLTRAKHCLWIVGSGSTLLKSNSIWENLVRDAMNRGCFFDAKDDHSLDAVIVKAAIENDELDNIVKMDTLRIQKKNWKDTNGPSPQVCHRYNTPEGCKFGARCNFSHGETSRNIVGRTATNDPGLDMKPTTSTSNLKTKLCREFAKGSCMYGTRCSFAHGSTELQKSFF

Gene

>AfisC3G03940
CATCACTTCAGTTTATATAAACTCTTTGGTTTCAAAACCACTTCAACGTTATACGCACAGTTCATGGGAAGCAATCCATCAACTAAAACAAACAAAACAATGGAGTACGAAAACGACGAAGAGGAAGCAGAAAAAGAAATGTCTAAAGCAGAAGAATGCTACAAACTGAACAACATACTAGGTGCAAATAAGCACATAACAAAAGCCCATTCATTAAACCCGTCTCATCCAAATATAGCTAAGGTTATGGCAGCCATTCGGGTTCATGTTGTTGCACTGGATAAGCCACTCAGACCATCTACAGACTACTGGTGCAGGATACTTGGCTGTAACTCTACTGATGATCTTCAGACTATGAAACTGCAGTACAAGAAAATGTGCTTGCCTACTCATCCCGATAAAAACCCTTCTATTTGTGCTGATGAAGCATTTAAAATTGTATCTGATGCTTGGGAGGCTTTGTCCGCATCGCAGTCTCGGAATCAATCTAAGGTACTTCTTTCATTTGCATGCACACAGGCGTGCGCGCACACACACGATGGCTACATGAATTGAATCTGATGCCAACTTGTTATTTGCTAAAGATTTTAGTGAAACAGAGTTATCATAAAAACTGTTTACCTATTTTTTATGACTAATAGATCCATAGCGTGAATCATGTTGCAGTTATCTATATGTGTTCCATATCTTTCATATAACACGCAGAAATGGTCATATGTGCCCAAACTGAAATTCAATTGGGAAACTAAAAAATATATGAGAAGAACTGAGTGTGTTTGCTCAGCTACATATTCAGTAGTTGAATTTTGTCAAATTTGAGTATCCTGGGATATTTTTTACCATGTTTATCAACACATTTTTATCAGCAAAAAATATGTTGAAACTAAAAAATAGATAGAATTTGATTGCCAAATGAAATGGGTAAACTGTATTAAAGAAACTAAGCGGGTAATATTCAATGTGCATCATGGTGCAGATAGTGCGGCTCAAACTGATGTTATACCAGTGCATAGGCTTTACATGGAAAGTTGTTAACCAAAAGTCAGGAGATGTTTAGCAGATTTGAAAAAAGATGTCTATTTATAAATTAACTTCCATTATCTGCTATCTCTAATATTCAACTGCCATGATGTATCAATTTGTGGGCATAACTTTGGGTATCAATATCTGCTATGTTATTTTAGCAGCAGGACCATTCTTCTAGGAAACAATTTTATGTTTTTTTTCCTGCCCAAAATTTTGTTTTTGTTTACCATTTTTACCAGACCTGATAACAGTTTTATTTTTATTTTTCTTTTCACAATCACAGGATAACACTGAATCTGATAATTTCAGAAATACCAATTTTGGTGCTTCAAAACAACATAACCAAAGTGCAAGTTCATGCAACGACGATGGCGGTCAATATAATAAGACTTCATACAATGACTTTGAGTCCAATGATTCATCCACTAATTCGGATGCAAATTCAGAGAGTTCATCAGAAAATGGTGGTGAAAATTCCAATACTCACAGTCAAAGCTTTGCAGGAGACCATAATACTCATTCTTCAAAATATGATTACAAAACTCATTCTTCGAAAAATAATTTTTCATCCACAAGCAAGCCTAGCTTTTTTTATGATGGTAGTGACAATAATGCAGAATACGCTTTTGCTTCCAAGTTCAAAGGAAAGATTGACATGGAAAACATGCAAGCAACAACTTTAGTGCAAATGGTGTTATCATGGTCACTAAAGGACGTCTTCAAGAGAAATTTCTTTAAAGATGAGGTTAATATTTTAAGCCAAATTTTTTGTTGATTTCTCCTTTAGGCTTCTTCTATGACTGGTACATGAAATAAAACGATTTTGTGTCTAAATTCATTTTTACAGGTCAAAACAATTCCAAAGACTTTTACCTCTTTGAAGGAATATTTAGACTCGTTTACCAGCCCACTAACTGAAGAAGTGCATGCTGATCTATGTTCGAATCTGGAGACAATATCACAAGCACCTTATGTCAAAGTCGAATATATTGAGGAGCTATCAGCAGCACAATTGCAATACTACATTAAAGTTAAAAACCAGGACAAACATTTAGATGGCAAGGAAACGTACACACCAATCGAAGCTGATATGCTTGTTTTATCTGAATGCAAAATCAAACACATATCCGACCTCATGAAAAATGAAAAATCTTATGTAATTGCATACGTCTTAAAAGCTGGAAATGAGACTGACGTTTTATCACCAAACGAGCACATTATCAAAACAACCGAAAGATTTCCAATAGAGAAATATTTCAAAAAACAACTTGGAAAAGAACCGCAACAAATAAAACCTCTATATGCAGCTCACATTCTAACCATGATTACGTTCAATCGCATATGGAAATCACTCAATGAAGGTATGTCTGATCGAAGAAGTAATGACATTCTTAATAAGGTTTGGAATTATGATGTTCTGGTGAGTTTTTAAATAGTATAATTTGATGCTTTTTTATTTTGTTATATCATAGAGACCTTGCTTTATCAATGCATTTATTTATTTAACAGGCATCAGAAGGAGGTACTTCAATCTCATCATACTATGTCGACGACCTTGAAAAATTCAAGCTTAACAAATCTCAGTTTGATGCTGTAAAAGACTGCCTATCTACAATTTATGATCAAAATCTCAAAAGTACAACAATCAAGCTCATATGGGGACCTCCAGGTACTGGTAAAACTAAAACAATCAGTACTTTGTTGTACATTTTGCTTCAAAAGAACCATAAAACTCTTGCATGTGCACCAACAAACACTGCTATAAAAGAAGTTACTACTCGACTACTGAAATTAGTGAAAGAATCATTGAGTCAGAAGCACAGGCTTGGAGATTTGGCTTTGTTTGGAAATAGTAAACGAATGAAAATCGACAATGATCTTAGCGAAGTGTTCATTGAAGATCGGGTTAAAAGGTTACGAACAATTTTTGCGCCTCTAACAGGTTGGAGGCATCAACTTAGCTATATGCTAGATCTGTTTGAAAATGCAACTTCACAATATGAGCTGTATTTAAGAACTGTGAAGGAAAATGAAGACATTGAAGAGGGATCAATAAAAGTGCAAGAATTAACACTTAAGGAATATATTGTAAAACATTTCTTTTCACACGCGAAAGAGCTGTGTGTTTGTTTGACAACTATGTCTACAGATCTACCAAGAATTTCTATCTCTGCAAAAAACTTGGAAAATATGTGTTTGCTCGTAGAATTGGTTGATTCTTTCGGAAAATATTTGAAGTCCGTGAGAGTTACTAGCAACATGCTAATAGAAATATTCGAAGAATCGATTCTTGGAATGTTGAAGGATAACTTACTTAGGACAAATGATTACACTGATATGAAAAGCAAGTTGAGAAGCATGCGGTCTGATATAGTGAAAATTCTACGAGTCCTGTCCAGAACTATTTCTCTTCCCGATCTATGTAACAGAAGCTCAATACAAGAATTCTGCCTACAAAATGCAGTTGTAATAATTTGCACAACTAGTACATCCTTTAAATTACATAACGTGCAAATGGAAAAGCCGATAGAAAATTTGGTAGTTGATGAGGCAGCGCAGTTGAAGGAATGTGAGTCTTTGATTCCTTTACAGCTGCCTGGAATTCGCCATGCTATTTTTATAGGCGACGAACACCAATTACCAGCTTTGGTCAAAAGCAAGGTACGTTAATCACATTACACTTGAACGTTATACAGTTCTTAATTCTTACTATTATGTGAACTTTGCAATTTACCAGATAAGTGAAAATGCTTGCTTCGGCAGAAGTCTTTTTGAAAGATTGAGCTCTTTAGGACACAAGAAACACTTACTTGATGTTCAATATAGGATGCATCCTTCCATAAGCAAATTTCCAAATGCTAATTTCTATGATAAAAGAATTTCCGATGGTTCAAATGTGTTGCATCCTAGCTATGAGAAACAGTACTTGGCTGGAAAAATGTATGGCCCTTATTCGTTTATAAGCATTGAAGCTGGAAAAGAAACATCTGGTAAGAACGGAAGAGGGTGGAAGAACATGATAGAAGCTGAAGTTGTAGTGGCAATTATCAAAAGCCTTCATAGAGGTAATATAGTATAATATGGGCATTATTCTTATTCTGATATATAATAGTTACACCTGTAAGTTAATGATCATCATAGACTTATGTTCCTTGTCATATTCTTTGGTCTGGTGTTACAGCATTCAGTACCAAAAAGGAAAAGATTGGAGTTGGAGTTATTTCACCATATACAGCTCAAGTTTCAGCTATACAAGAAAAAGTAAAGAAAACATATTCGACTACGGATAATGTTTCGGTTAAAGTTCAATCTATCGATGGATTTCAAGGAGGAGAAGAGGATATAATAATCATATCAACTGTGAGATCCAATAAAGCTGGGAATGTGGGTTTTCTTGATAAGCTTCAAAGGACAAATGTGTCTCTAACCAGAGCAAAGTAAGAACTCTATATATACACAGTAAGTTTAATACTACCATGACTTGAATGTACGATCATAATTGACAAATCATTTTGTGCAGGCATTGCTTGTGGATAGTAGGAAGTGGATCAACCTTGTTAAAAAGCAATTCAATATGGGAAAATTTAGTAAGAGATGCGATGAATAGAGGTTGCTTCTTTGATGCAAAAGATGACCATAGTCTGGATGCTGTTATTGTCAAGGCAGCCATTGAAAATGATGAACTTGATAATATAGTAAAAATGGACACACTCCGTATTCAAAAGAAAAATTGGAAGGTATTCTATCAATCTCAAACTTTCTCAATGCACCTCAAAATTATAGCTAACATAATATTTCATTTTAATTTCAGGACACTAATGGCCCCTCTCCACAGGTGTGCCACAGGTATAACACACCTGAAGGATGCAAGTTTGGTGCCAGATGTAATTTTTCACATGGTGAAACAAGTCGGAACATAGTAGGCAGAACTGCAACAAATGATCCAGGCTTGGATATGAAACCAACCACATCTACTTCTAACTTAAAGACAAAGCTCTGCAGGGAGTTTGCCAAAGGTTCCTGCATGTATGGTACTAGATGCAGTTTTGCTCATGGTTCAACCGAGTTGCAAAAATCATTTTTTTAGAATTATTTTAGCAGAACTAAATGTGTGTGTTTGATTGAATATAGTCTTTTGTGCAACATATTAGGAAGGAAGAAATGTTTATCGTCAAGCACTAAGGTTTAAATCATTCCCCATTCAGTTTACTTTTGCTTAACACTTGTTCAGTTTCTATGTTACTCCTTTCGGATGCC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020249491.1	3.8e-250	helicase SEN1-like
Swissprot	Q00416.2	7.5e-46	tRNA-splicing endonuclease positive effector
trEMBL	A0A6P5ER60	1.9e-232	uncharacterized protein LOC109707103 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G37150.1	39.95	1e-167	587		P-loop containing nucleoside triphosphate hydrolases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G03940	AT5G37150.1	876	445	22	268	1119	1	819	39.95	1e-167	587
AfisC3G03940	AT1G65810.2	890	459	18	276	1139	22	863	40.11	8e-166	582
AfisC3G03940	AT1G65810.1	895	454	19	276	1139	22	863	39.89	9e-166	581

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00226.28	DnaJ	Domain	85	141	39.0	5.9e-10
PF13086.3	AAA_11	Domain	508	872	145.7	1.9e-42
PF13087.3	AAA_12	Domain	880	1076	206.0	3.8e-61
PF00642.21	zf-CCCH	Family	1198	1221	29.8	3.5e-07

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0006369	P	termination of RNA polymerase II transcription
GO:0003723	F	RNA binding
GO:0030529	C	intracellular ribonucleoprotein complex
GO:0007165	P	signal transduction
GO:0005694	C	chromosome
GO:0006281	P	DNA repair
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0006397	P	mRNA processing
GO:0007399	P	nervous system development
GO:0008026	F	ATP-dependent helicase activity
GO:0008380	P	RNA splicing
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0030154	P	cell differentiation
GO:0031981	C	nuclear lumen
GO:0042995	C	cell projection
GO:0043167	F	ion binding
GO:0048511	P	rhythmic process
GO:0051130	P	positive regulation of cellular component organization
GO:0065003	P	macromolecular complex assembly
GO:0071310	P	cellular response to organic substance
GO:0071822	P	protein complex subunit organization
GO:0097458	C	neuron part
GO:1902494	C	catalytic complex

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K10706	SETX, ALS4; senataxin	EC:3.6.4.-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network