Gene information

Detail information of AfisC3G04397

Location

Gene	Chr	Start	End	Strand
AfisC3G04397	chr3	792685112	792686060	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241438.1	2.0e-66	myb-related protein MYBAS2-like isoform X2
Swissprot	Q4JL76.1	1.0e-59	Myb-related protein MYBAS2
trEMBL	A0A8T3CDE5	1.6e-62	Transcription factor MYB48

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G46130.1	50.43	6e-56	213	ATMYB48;ATMYB48-1;ATMYB48-2;ATMYB48-3;MYB48	myb domain protein 48

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04397	AT3G46130.1	232	82	3	1	199	2	233	50.43	6e-56	213
AfisC3G04397	AT5G59780.3	220	80	3	1	199	3	216	51.36	5e-55	210
AfisC3G04397	AT3G30210.1	213	108	3	7	205	28	238	41.78	4e-40	160

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	8	55	58.5	5e-16
PF00249.28	Myb_DNA-binding	Domain	61	105	59.9	1.7e-16

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0006952	P	defense response
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009620	P	response to fungus
GO:0009651	P	response to salt stress
GO:0009686	P	gibberellin biosynthetic process
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0030154	P	cell differentiation
GO:0043565	F	sequence-specific DNA binding
GO:0080086	P	stamen filament development
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network