result

Gene information

Detail information of AfisC3G04888

Location

Gene	Chr	Start	End	Strand
AfisC3G04888	chr3	869353938	869355627	+

Sequences

CDS

>AfisC3G04888
ATGGCATTTTCAAGCATGAATCCACTGAAAACATTTCTCCTCATCATCCTCTTCAGCATCTCCTACGCATTAAACGATAGAATTACCCTTACTCAGTCCATTACTGGATCAGAAAAGCTCACTTCCGAAGGTGGTAAATTTGAACTAGGGTTTTTCAAACCAGGCAAATCTCCATACCATTATCTCGGAATATGGTACAATCTTAACCTCGTATCTCAACAAACTTCAGTTTGGGTTGCCAACAGAGAAACTCCATTAACTGATATTTCCAAAACAAATATTGCAATATCCGAAAATGGCAATTTAGTGCTTTCCAACCAAACAAACCCTCTTATTTGGTCCACTAACATCACTCATGATACTCATAAAGTAGTAGCTGTTCTTCTAGATAGTGGTAACTTAGTTTTAAGAGATGCGTCAAATCCAAACATAACTCTATGGCAAAGCTTCGACCATCCAACTGACACGTTATTACCAGACGGCAAGCTCGGACTAAACAAAGTAACCAACGAGTTGATAAGATTAACTTCCTGGAAAAATGAAGAAGATCCTGCCCCTGGAATTTTTAGTCATGAAGGCGACCGGAACGGTTCAAGTGAATACTTCATTGTTTGGAACTACTCCGTCAAATACTGGGCCAGCGGAATCTGGAATGGTCATATTTTCAGTAAGATCCCTGAAATGACCATACATCCCCATAGCGATATGGCTTATATTTCCAATGACAGAGAAAATTACTTCACGTACACAATGAAAAGCAACTACCCACTCATGTCTTGGTTTGTAATGGACTTATCTGGCCAGTACAAGCAGGTTACTTGGGAGACCAACAACAGTTGGAGCCCGCACTGGATTCAACCCCAAAAGCAATGCGACGTTTATGGTTTATGTGGTCCGTTCGGTGTCTGCAACGAGGTTGGTTTACCATTTTGTAATTGTATTAGGGGGTTTGGTGAAAATTCCCCATCAGATTGGGCTTTGAGTGACTGGACAGAAGGCTGTGTTAGAAATACAAAACTGGAGTGTGAAAGCAGCGGAAAGGGTGAAAATGATCGGTTCTTTATGATGCCCAACACTAGAATGCCAGCTAATCCTCGAAGCGTACAAGCTGAAAGTGCTTCTGATCCTGATTGTGAGTCTAATTGTTTGAATAACTGTTCGTGTACTGCTTACACTTATAACTCTAGCGGTTGCTTTGTTTGGCATGGCCCTTTGCTTAATCTACAAGATAGGTACAATGGTCCTAACGGAGGCATTCTCTATGTTCGTCTTGCCGCCTCCGAACTTCCTATTATACATAATAGCAAAGTAGTTATAATCATTTCTGTAGTAGGTGGTGTTTTCAGCTTCTTAATATTACTCGTTGTTGCATGGTTGGTATGTTGTTGGGGAAAAAGAACTCTAAGCAGATCAAAGGTTGTAGAAGGTGGTTTGATTGCATTTCGATACAGTGAACTGCAACAGGGGACTAGGAATTTCTCAGAAAAACTCGGAGGAGGTGGTTTCGGGTCGGTCTTCAAAGGAGTTCTATCCAACTCATCATCTAGTGAGATGATAGCTGTGAAGCAACTAGAAGTATCTGTTGGGATATAA

Protein

Gene

>AfisC3G04888
ATATGAGCTGATTATTTCAATCTCTACATCCATACTGAAAAGCTTTAACCTAGCCACAGTTTCATCTCTAAACCTTCATCCTCCAGGATTTATATTCATGGCATTTTCAAGCATGAATCCACTGAAAACATTTCTCCTCATCATCCTCTTCAGCATCTCCTACGCATTAAACGATAGAATTACCCTTACTCAGTCCATTACTGGATCAGAAAAGCTCACTTCCGAAGGTGGTAAATTTGAACTAGGGTTTTTCAAACCAGGCAAATCTCCATACCATTATCTCGGAATATGGTACAATCTTAACCTCGTATCTCAACAAACTTCAGTTTGGGTTGCCAACAGAGAAACTCCATTAACTGATATTTCCAAAACAAATATTGCAATATCCGAAAATGGCAATTTAGTGCTTTCCAACCAAACAAACCCTCTTATTTGGTCCACTAACATCACTCATGATACTCATAAAGTAGTAGCTGTTCTTCTAGATAGTGGTAACTTAGTTTTAAGAGATGCGTCAAATCCAAACATAACTCTATGGCAAAGCTTCGACCATCCAACTGACACGTTATTACCAGACGGCAAGCTCGGACTAAACAAAGTAACCAACGAGTTGATAAGATTAACTTCCTGGAAAAATGAAGAAGATCCTGCCCCTGGAATTTTTAGTCATGAAGGCGACCGGAACGGTTCAAGTGAATACTTCATTGTTTGGAACTACTCCGTCAAATACTGGGCCAGCGGAATCTGGAATGGTCATATTTTCAGTAAGATCCCTGAAATGACCATACATCCCCATAGCGATATGGCTTATATTTCCAATGACAGAGAAAATTACTTCACGTACACAATGAAAAGCAACTACCCACTCATGTCTTGGTTTGTAATGGACTTATCTGGCCAGTACAAGCAGGTTACTTGGGAGACCAACAACAGTTGGAGCCCGCACTGGATTCAACCCCAAAAGCAATGCGACGTTTATGGTTTATGTGGTCCGTTCGGTGTCTGCAACGAGGTTGGTTTACCATTTTGTAATTGTATTAGGGGGTTTGGTGAAAATTCCCCATCAGATTGGGCTTTGAGTGACTGGACAGAAGGCTGTGTTAGAAATACAAAACTGGAGTGTGAAAGCAGCGGAAAGGGTGAAAATGATCGGTTCTTTATGATGCCCAACACTAGAATGCCAGCTAATCCTCGAAGCGTACAAGCTGAAAGTGCTTCTGATCCTGATTGTGAGTCTAATTGTTTGAATAACTGTTCGTGTACTGCTTACACTTATAACTCTAGCGGTTGCTTTGTTTGGCATGGCCCTTTGCTTAATCTACAAGATAGGTACAATGGTCCTAACGGAGGCATTCTCTATGTTCGTCTTGCCGCCTCCGAACTTCCTATTATACATAATAGCAAAGTAGTTATAATCATTTCTGTAGTAGGTGGTGTTTTCAGCTTCTTAATATTACTCGTTGTTGCATGGTTGGTATGTTGTTGGGGAAAAAGAACTCTAAGCAGATCAAAGGTTGTAGAAGGTGGTTTGATTGCATTTCGATACAGTGAACTGCAACAGGGGACTAGGAATTTCTCAGAAAAACTCGGAGGAGGTGGTTTCGGGTCGGTCTTCAAAGGAGTTCTATCCAACTCATCATCTAGTGAGATGATAGCTGTGAAGCAACTAGAAGTATCTGTTGGGATATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020258340.1	1.1e-171	uncharacterized protein LOC109834727
Swissprot	O64477.1	5.8e-96	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130
trEMBL	A0A804KM61	1.2e-138	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G19130.1	43.63	3e-104	375		S-locus lectin protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04888	AT2G19130.1	534	268	16	9	525	7	524	43.63	3e-104	375
AfisC3G04888	AT4G21380.1	541	272	18	33	524	39	556	36.41	6e-81	298
AfisC3G04888	AT4G27290.1	529	285	16	12	524	9	495	35.16	2e-78	290

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01453.21	B_lectin	Domain	74	180	117.4	2.5e-34
PF00954.17	S_locus_glycop	Domain	212	319	98.0	3.9e-28
PF08276.8	PAN_2	Domain	347	407	59.3	2.5e-16

Gene Ontology

Accession	Ontology	Name
GO:0016020	C	membrane
GO:0006952	P	defense response
GO:0004672	F	protein kinase activity
GO:0005488	F	binding
GO:0009987	P	cellular process
GO:0044464	C	cell part
GO:0051704	P	multi-organism process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network