result

Gene information

Detail information of AfisC3G04970

Location

Gene	Chr	Start	End	Strand
AfisC3G04970	chr3	884470779	884472359	-

Sequences

CDS

Protein

Gene

>AfisC3G04970
ATGTTTAATCTCAAGAGAATTGCTGCAGCAACAGATTACTTCTCATCTGTTAATAAACTTGGAGAAGGTGGTTTTGGTCCTGTTTACAAGGTTAACATCTTGTCTTAAGCATTGTACATGATCTATGTAAATCAAATCATATATCTATACAATATTCAAATTCTTTTATTATTTTTTATTTCTATTTACTTATTTAATAAACCATAATAAACCACTTCCGAAAAGGTATAATAGATTTTAGCAAATTAGTACACTAATAACAAACTTAGTCCACTTTTCACCAGCATGTAAAATTGACATATTGCATTGATGCTATTTGAATAGTGCCAAATAATGCTAGTGCAAACATCGTCTGAGCTAGTGCAGATAGTGCTATGCACTAGCGCAATTTTTTGGGAAGAAAAAATTTGTTCTAGTGCTATTTGAACCAGAGTTGGTATAAATAATCGCTTTCTACCATGTTGACAGAGGGTGGATTATTTTTATATTATGCTTTTAAACTGAAATAACTGAGAAAATGACCAAAATGATAGAATATCCTAATGTATTAAAATAGAAAATTTTCTCCATCAGAAATTAAAACTGAATGTAAACAATCAGGGTAAACTTAGAGATGACCAAGAAATAACAGTAAAGAGACTTTCTAAAACATCGGATCAAGGTGTAGAAGAGTTCAAAAACGAGGTTATGCTTATTGCAAAGCTTCAGCATAAAAACCTCGTTCAGCTTCTTGGTTGTTGCATTCAAGGAGAAGAAAGAATGTTGATATATGAATACATGTCGAACAACAGTTTGGGTGCATTCTTGTTCAGTAAGTTTTCATCTCTTTTCAGCGCATATTACTGAGTTTCTGTTGATCTTGAACTTTTTTTCCCATTTCAAACATGTTTTGGCAACTATTTATAAGCACTTAGAAATCCTTATAAGTTACTGTATTTACATGCCTGAAAACAACTTATAATGAGGAAAATATTTTATTTAAATGTAGACAAAGCAAAACAAGTACATGCTTATGACTTATTTATATTTTTAGCAAAGCCATCTATGTTTCAATTTAGGTATCAAAACATTTTAAATTTTACTATTCATTTAAAACTACTCAAAAGTTACAATGCAAAGCTATTTTGAACATCTATAAAAACAATGGTCCCAATCAGGCTCTTGTAGAATTGACACTTCAATTTGCATTCAGATGAACAGAAAAAGTCATTGCTGGATTGGACTACTCGACACCAAATTATAATTGGGATTGCTCGAGGACTTCATTATCTTCACCAAGATTCTAGATTCAGAATCATTCATAGAGATCTTAAAGATGGAAATATTCTTCTTGATGCAGAAATGAAGCCTAAAATCTCTGATTTTGGCATGGCAAGAATATTTAATAGCGATGAAACAGATTACAATACCAGAAAAGTGTCGGAACATAGTAAATAACTACATATGTCAATTTTGTTTCTATTAGTAGCATGGTTATATTAACTAAAGAGTAATGAAAAGATAAAACTAACAGTTACAACATTGATATGTGTAGTGGATACATGTCTCCTGAGTATGCAATGGACGGTACATTTTCAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256477.1	4.9e-72	receptor-like serine/threonine-protein kinase SD1-8
Swissprot	O81833.1	2.4e-63	S-domain-1 (SD1) receptor kinase 1
trEMBL	A0A5P1F8I1	3.6e-72	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G21390.1	66.48	1e-65	246	B120	S-locus lectin protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G04970	AT4G27300.1	176	57	1	176	487	662	67.61	8e-66	246
AfisC3G04970	AT4G21390.1	176	59	1	176	516	691	66.48	1e-65	246
AfisC3G04970	AT1G11330.2	176	64	1	176	511	686	63.64	2e-64	241

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	17	174	130.1	7.7e-38

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0016021	C	integral component of membrane
GO:0042742	P	defense response to bacterium
GO:0005773	C	vacuole
GO:0005576	C	extracellular region
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0030246	F	carbohydrate binding
GO:0005524	F	ATP binding
GO:0006468	P	protein phosphorylation
GO:0012501	P	programmed cell death
GO:0009506	C	plasmodesma
GO:0009751	P	response to salicylic acid
GO:0031625	F	ubiquitin protein ligase binding
GO:0045087	P	innate immune response
GO:0048544	P	recognition of pollen

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network