result

Gene information

Detail information of AfisC3G05802

Location

Gene	Chr	Start	End	Strand
AfisC3G05802	chr3	1034132431	1034134200	+

Sequences

CDS

Protein

Gene

>AfisC3G05802
ATTTAACTTATTTTAATCACGTTAAATTAATGGGCAAGATAATTCGCTTCTGCTGTTATTTATACAGCTCCCATATTCTTCTTCTTCTCTAAAGAGAGTAAAGCTGCACGAGAGATAGAGAGCCTCTATTAAAAGGAAAAAAAAAAAAGTGAATGATAAATTTTATGAGGTTGAGTGATTCGTGCATAAAGAACTCAAGGTATTGTGACTCTTAACCCTTCTTTCCCTTTATTTTATTTAGGTTTTTATGCAAACATAGAAATCAAAATCCTAATTTTTCTGGGTTTTTCATTTCTTGTTATTTTTAATATTTTTCTTTCATACAACAAAAAGGGTTTGTTTGTACGCCCGCTATTTGGTTTTCTTTATTTTTATTTCTTAAACTGGAAAAGGTTACCTTTTTTTACTGGTGTTCCTGTTTCTTTAGATCTTTATCTAATAACCCATACACTTGTTCTTTAATTTTAATAAGAACCGGTTGGGTATTTTAATTTCTTTCTTTTTAAATCCTTTTTATTTTGGGGTTGAGTAATGGCGACGACCGTTGACATGTACAAAAACAACAATAGTTCTGTTGTTGATAACCTGAACAGTGAGCTTATGAATGCACTTCAACCTTTTATCAAAAGTGCTTCAAACTCACCTACTTCTTCTTCCATTTCAAATTCAAATTTGCAACCTCAAACTCCTTCATTTTCTTCTTCTTCTTATTCATATCCTCAACCTACCAACTATGATTTCATGTCATATGCTCAAGATCCCAACTTCTACTACCAAACTCCAAATTTCTATAACCAAGAATCCAATTGCTATGATCAAAATTCCAACTTTGCCCTCCCAAACTTAAGCCCTTATCAAGTATTTCAAATTCAATCCCAACTACAACACCAACAGCAGCAGCAGCAATTTCAACTCTACGCATCATCATCATCATCATCCACTGACAACCAAAACATTCAAAAAAGACATCTCGGCCCGAAATCTCAGCCCATGAAGCCCACAATCCCACTCTTGAAGCCGGTCAAATTATACCGTGGTGTTAGGCAGAGACATTGGGGCAAATGGGTTGCTGAAATCAGACTTCCAAGAAACAGAACCAGGCTCTGGCTAGGCACATTTGACACTGCAGAAGAAGCAGCATTAGCTTATGATAAAGCTGCTTTTAAGCTCCGAGGCGACTCTGCTAGACTCAACTTTCCAGAATACAGAAGGAATGGTGCTCACTACGGCCCTGAGCTACACTCTTCAGTTGAGGCCAAACTCAATGCCATTTTCGTAAACATAGACAATGCGCCAAAGGGAAGCAAAAACAAAGAATCAAAAGAAGAAAGTGTTGAGAACAAGTTTGAAGAAGAGTCGCCATCTCCTTCAGAAGTAGAAGTTGTTAGTGAAGTTAAACAGCTGGAGTTTGGTGAGAAGCCTTGGGATGAAATGGAAAGCTTCTTGTTGCAGAAGTTTCCTTCGCTTGAAATCGACTGGGATTCAATCCTTAGTTGATTGGTGTGGTGATAGTTAGCTCCTTGCAAATGGCATTTTAGACATTTGCTTGTCGCTGTTGAAATATGTATGTTTGTATTTAGTTGTTTCATAGGTTGAAGTTAGTATTAGTTTTGTGTGTACTTCTGTTTTAGAATGATCAGAAGTCTCCTGGTTTGCTACTTGTTTTTATGTTAGCCTTACCAGGAAGTTAGGTTGGAGTTCTTATGTATGTTATAATGTAGTAATAAACTAGTTTTATGTATCTATTATGCAGTTCATGTGATTGTTAAG

Functional annotation

Database	accession number	e-value	annotation
nr	RRT83688.1	6.7e-50	hypothetical protein B296_00012166
Swissprot	O65665.1	6.8e-39	Ethylene-responsive transcription factor ERF060
trEMBL	A0A8J5VW16	2.8e-50	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G78080.1	42.74	1e-51	200	AtWIND1;RAP2.4;WIND1	related to AP2 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G05802	AT1G78080.1	351	154	9	1	321	1	334	42.74	1e-51	200
AfisC3G05802	AT1G36060.1	334	139	11	20	321	10	314	40.12	4e-49	191
AfisC3G05802	AT4G39780.1	336	117	8	5	319	4	266	37.20	6e-49	191

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	167	215	53.9	1.4e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005737	C	cytoplasm
GO:0005730	C	nucleolus
GO:0009416	P	response to light stimulus
GO:0009651	P	response to salt stress
GO:0009737	P	response to abscisic acid
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009873	P	ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0044767	P	single-organism developmental process
GO:0071214	P	cellular response to abiotic stimulus
GO:0071497	P	cellular response to freezing
GO:2000070	P	regulation of response to water deprivation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network