result

Gene information

Detail information of AfisC3G06359

Location

Gene	Chr	Start	End	Strand
AfisC3G06359	chr3	1134933901	1134937684	-

Sequences

CDS

>AfisC3G06359
ATGATGCATGGGAATGTGAATGGTGGAAATGGATTGATTGAAGATAATGTTGATCTTGAAGTCGATAACATAAACTTTTGGGCTAATCTTGGTGTAACCCCACATGTCAATCCAGTCGATCCTGTTCATCCAATTCAATCCCATCATCACAATCATAGTCACTATCACAATCAACATCATCACCAAGAGTCAATCGAACCTCAACTTGAACTTGTAGAACAACTAGTCAGAAGAGAGTTGTTTGAAGTTGATTGTGATCCAAGGCTTGAACCATTTATAGGTATGGAATTCGATTCTGGTGAGGCAGCCAAAACCTTTTATATTGCTTATGCAGGCCGGATTGGGTTTTCTGTTCGAATTGCTCGATCACGTAGATCAAAATGTAGTGAATCAGTAATCATGCTTCGGTTTGTTTGTTCAAGAGAAGGATTCAGTCGTGAAAAGAGAATTATTGCTGGTAAGAAGACAAGAAAAAGAGCTGCTTCTATAAGAGAAGGTTGTAAAGCGATGCTTGAAGTAATTCGAAGAGCAGATGGGAAATGGTCAGTTACGAAACTCATAAAAGAGCATAATCATGAAGTCGGAATGCCAAGTAGAGTTCATTATATAGCTACTGAGGTAGAAGGAGATATGGAACCTTATCTAGGCATGGAGTTTGAATCTCTTGAGATTGCAAAGACATTCTATTATGTTTATGCTAGTCGGGTTGGATTTGAAGCACGAGTTAGACAGTCGCGTCGATCACCCCATGATGAGTGTCTTAAAATGTTGAAATTGGTCTGTTCAATGCACAAATATCATTCTGGAAGAGATAATAATGGTGAAGATAGTAGAAGGCTGATCCAAGATACTGGAAAAGAAGGCTGTGATGCATTATTTGAGATAATCAGAAAAGATAATGGCATTTGGGTGGTTTCTAAGCTTGTTCTAGAGCACAGTCATGAGCTGATTCCATCACCACCCAGCAAAGTTAAATGTGTACGATCGCAGGGAGAGATGCTTGTCATCGCAAAGAACTTTTCCGACACTCGAAACCTTTTATTAAGTGGACAAGACTCGCAAAACTATCTCAGAGAGGTCAGGTACAATGATTTAGGACCTGAAGATGCTCAGGATTTTCTTGAATATTTGAAGAAAGCACAAGCGGAGAATCCCACCTTTTATTATGGGGTTCAAGTCGAGAACAATAATGTAATGACCAACATCTTTTGGGCTGATGCAAAAGCTCGAATGGATTACAACTATTTTGGCGATGCTGTAACATTTGACATGACATTTAAAAACGACAAAGAAATGATGCCAATAGTCACTTTCAGAGGTGTCAATCATCATGCACAGCCCATAGTTTTTGGGTGTGCCTTGCTTGTTGATGAGTCCGAGACATCATTTATTTGGCTACTCAAACAGTTGCTGGCAGCCATGGATTCTAGAGAACCAGTGTCATTAATAACCGACCTAAATAGAGCAATTTCTAATGCAGTTGCTAAAGTTTTTCCAAACACCCGCCATTGCTTTTGCAGGAGGCATATCTTGAACACTATTCAAGATGAGTTTGCAGATTTATTTTCACCGCATAATCTTTTCCAGGAGGAGCTTATGAAATGCATTGATGAATCAGAAACATGCGAATCTTTTGAATCCTGCTGGGATGCAGTGCTAGATAAATACGACTTGAGAGACCATACATTATTGCAGTCTTTATATAACATTCGCCATCAGTGGGTGCCTGTATACATGAAAGACACATTCTTTGCAGAATTAGACTTTTCTAGGAAATCAGTTGACCTTGAAGCTATTATTGCAAACTGCTGTAATTCAAAAAACTCATTGGCACTGGGCATTAAGCAACTAGGACTAGCACTTGCAAGTACATACGAAAACGAAGCTCAAGCAGACTTCCTTACAATGTTCGAGAAACCATATATTAGAACAGCTTCACCACTTGAAAAGCAAGCGGCTGGCATATACACAAGGGCAGTGTTTGATAGGTATCAGGAAGAATTCTTAGAAGCCCTTGGTTATCATGTGAACAAATATGAGGATGGAGTAGCTACTAGGTTTCAGTTGACAAGGGACGATGGAAAGGATATGTACACGGTCACGTTTAGTGCTTCTGAAATCAAAGTTCATTGCAGTTGCTGCTTGTTTGAAGTAGCAGGCATTCTTTGTAGACATGTATTAAGAGTATTCATAGTGAGTGGTGTACGTACGCTGCCAAAAGAATATATATTGAAGAGATGGACAAAACATGCAAAGAGTTACAGTGTAGGAGATGAATGTGGGGTTGAAATTAGAGGAAGTAGTGAAGAACCCACGTCTTCAAGATATAATGATCTTTGTAAGGATGCCATTCGATGTGCAAGAGAGGGCTCTACCTCTGGTGAACTGTACAATTTTGCAAAAGATGAACTACAGAAAGTTTTTGCCCAAATAGTTACAATAAAGCAGAAAAGAGAGCAGCAGTCTTTGGAAAGTTATATGAAACCTCAATCTAAGCATGCAAAAAGACATGGTAAAGTGATGGTGAAAAAAGATTTTTCCAGCAACAATGTGAAGAGATCAGGGTCGAAGTTATCAGCGGAAGATGAATATAGGTAA

Protein

Gene

>AfisC3G06359
ATTAGAGTACTCTCACACCATACATGAAATCAAAAGCCGCATCCCAATTTTTTCGAAACTTATTTCTGCAATTAAAATCTTCAAAATCCCCGAATAATCAGTGAGTCTTCTTTTAATCTACTTTCAGTTATTACAAATGGTATTATTGTGAAGTTAGGGTTTTTTTGCCCCCCTATTTTGATTTCAGTCTTTCAAAATGATGAAATATTACTTCTTTGGCTCTGAACAGTCATTTGTGAGCAAGTTCAATTAATGAAAAGTGTTCTGTTTTCCTTCAGTTGCTTGATACTTCAAAATCATGTGTTTGCGATGATACTGAACATAATTTGAGCTATATTTGGTTGAACCGATTATGTTCACATAATCTTAGTACAGGAGCTGCTGCTAATTTGTAAATTAGTCAATGCTCACTAAAAGTTCCTGTGTTAGTTTAGTGTAATCTATGTTTTTAGAGCTAGGTTGATTTACGTAGTTATTTGTCGATAATTTGTACAGTTAATACTCCTTGCATCATATTTCTCATCTCTAAGTTTGTTGGTCATTCTGTCATTTTGTTGATGCATAATGCTCCTGTCTTTTACATTGTTCTCTAGCTATATTTTCTATATCTTTGAGCTAATTTGGCATGATTGGCTGCTGTAAGTATTCAAAATCCTTAATATTTATCCGTTCATTCCTAGATTGTTCATTGCCTGGTTTAGACTAACGAGTAACTTTGAGATTGTACTATATTGGCAAAACAAAGATTAAATAGCTAGTTAATGAGTCAGATATTGCATAACACTTTGCAGGGGTTATTAGCTAGTTGAACCAAAATGATGCATGGGAATGTGAATGGTGGAAATGGATTGATTGAAGATAATGTTGATCTTGAAGTCGATAACATAAACTTTTGGGCTAATCTTGGTGTAACCCCACATGTCAATCCAGTCGATCCTGTTCATCCAATTCAATCCCATCATCACAATCATAGTCACTATCACAATCAACATCATCACCAAGAGTCAATCGAACCTCAACTTGAACTTGTAGAACAACTAGTCAGAAGAGAGTTGTTTGAAGTTGATTGTGATCCAAGGCTTGAACCATTTATAGGTATGGAATTCGATTCTGGTGAGGCAGCCAAAACCTTTTATATTGCTTATGCAGGCCGGATTGGGTTTTCTGTTCGAATTGCTCGATCACGTAGATCAAAATGTAGTGAATCAGTAATCATGCTTCGGTTTGTTTGTTCAAGAGAAGGATTCAGTCGTGAAAAGAGAATTATTGCTGGTAAGAAGACAAGAAAAAGAGCTGCTTCTATAAGAGAAGGTTGTAAAGCGATGCTTGAAGTAATTCGAAGAGCAGATGGGAAATGGTCAGTTACGAAACTCATAAAAGAGCATAATCATGAAGTCGGAATGCCAAGTAGAGTTCATTATATAGCTACTGAGGTAGAAGGAGATATGGAACCTTATCTAGGCATGGAGTTTGAATCTCTTGAGATTGCAAAGACATTCTATTATGTTTATGCTAGTCGGGTTGGATTTGAAGCACGAGTTAGACAGTCGCGTCGATCACCCCATGATGAGTGTCTTAAAATGTTGAAATTGGTCTGTTCAATGCACAAATATCATTCTGGAAGAGATAATAATGGTGAAGATAGTAGAAGGCTGATCCAAGATACTGGAAAAGAAGGCTGTGATGCATTATTTGAGATAATCAGAAAAGATAATGGCATTTGGGTGGTTTCTAAGCTTGTTCTAGAGCACAGTCATGAGCTGATTCCATCACCACCCAGCAAAGTTAAATGTGTACGATCGCAGGGAGAGATGCTTGTCATCGCAAAGAACTTTTCCGACACTCGAAACCTTTTATTAAGTGGACAAGACTCGCAAAACTATCTCAGAGAGGTCAGGTACAATGATTTAGGACCTGAAGATGCTCAGGATTTTCTTGAATATTTGAAGAAAGCACAAGCGGAGAATCCCACCTTTTATTATGGGGTTCAAGTCGAGAACAATAATGTAATGACCAACATCTTTTGGGCTGATGCAAAAGCTCGAATGGATTACAACTATTTTGGCGATGCTGTAACATTTGACATGACATTTAAAAACGACAAAGAAATGATGCCAATAGTCACTTTCAGAGGTGTCAATCATCATGCACAGCCCATAGTTTTTGGGTGTGCCTTGCTTGTTGATGAGTCCGAGACATCATTTATTTGGCTACTCAAACAGTTGCTGGCAGCCATGGATTCTAGAGAACCAGTGTCATTAATAACCGACCTAAATAGAGCAATTTCTAATGCAGTTGCTAAAGTTTTTCCAAACACCCGCCATTGCTTTTGCAGGAGGCATATCTTGAACACTATTCAAGATGAGTTTGCAGATTTATTTTCACCGCATAATCTTTTCCAGGAGGAGCTTATGAAATGCATTGATGAATCAGAAACATGCGAATCTTTTGAATCCTGCTGGGATGCAGTGCTAGATAAATACGACTTGAGAGACCATACATTATTGCAGTCTTTATATAACATTCGCCATCAGTGGGTGCCTGTATACATGAAAGACACATTCTTTGCAGAATTAGACTTTTCTAGGAAATCAGTTGACCTTGAAGCTATTATTGCAAACTGCTGTAATTCAAAAAACTCATTGGCACTGGGCATTAAGCAACTAGGACTAGCACTTGCAAGTACATACGAAAACGAAGCTCAAGCAGACTTCCTTACAATGTTCGAGAAACCATATATTAGAACAGCTTCACCACTTGAAAAGCAAGCGGCTGGCATATACACAAGGGCAGTGTTTGATAGGTATCAGGAAGAATTCTTAGAAGCCCTTGGTTATCATGTGAACAAATATGAGGATGGAGTAGCTACTAGGTTTCAGTTGACAAGGGACGATGGAAAGGATATGTACACGGTCACGTTTAGTGCTTCTGAAATCAAAGTTCATTGCAGTTGCTGCTTGTTTGAAGTAGCAGGCATTCTTTGTAGACATGTATTAAGAGTATTCATAGTGAGTGGTGTACGTACGCTGCCAAAAGAATATATATTGAAGAGATGGACAAAACATGCAAAGAGTTACAGTGTAGGAGATGAATGTGGGGTTGAAATTAGAGGAAGTAGTGAAGAACCCACGTCTTCAAGATATAATGATCTTTGTAAGGATGCCATTCGATGTGCAAGAGAGGGCTCTACCTCTGGTGAACTGTACAATTTTGCAAAAGATGAACTACAGAAAGTTTTTGCCCAAATAGTTACAATAAAGCAGAAAAGAGAGCAGCAGTCTTTGGAAAGTTATATGAAACCTCAATCTAAGCATGCAAAAAGACATGGTAAAGTGATGGTGAAAAAAGATTTTTCCAGCAACAATGTGAAGAGATCAGGGTCGAAGTTATCAGCGGAAGATGAATATAGGTAAAACAATTTTTTGTTGTATGGTGGTGATCAACACATGAGATGATATGTGAAGGTTATGATAATCATGTTATTGTAGATTATTAATTGTTTTGTTATGAAAAAAGAGTAGAGACAAGTTAAACCTCAATTTACTAATGAGGGGTAGTAGCTAGCGATCAATTATCTTTCACTTGCTAGTCTTACTACCCTTATTTTATTATCAAGTGCAGCAACGTTGATGAAACATGTGTCAGTGGTACATGTATGTTACCTGTACTGAGCTACAGAGTGTTTCAAATATGAAGCATGCTTAATGGGTTTCAAAAGATACGTATGTTGAATGATATGGGTTTCAAAAGATATGTATGTTGAATGATATGGGTTTCAAAAGAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241601.1	0.0e+00	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8.1	2.8e-124	Protein FAR1-RELATED SEQUENCE 5
trEMBL	A0A8B8J275	0.0e+00	Protein FAR1-RELATED SEQUENCE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G38180.1	38.11	1e-125	448	FRS5	FAR1-related sequence 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06359	AT4G38180.1	635	364	7	210	819	70	700	38.11	1e-125	448
AfisC3G06359	AT4G38180.1	115	56	2	89	201	71	184	48.70	8e-19	92.8
AfisC3G06359	AT2G27110.2	631	339	10	209	817	45	641	37.40	1e-118	424

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03101.12	FAR1	Domain	106	194	85.4	3.1e-24
PF03101.12	FAR1	Domain	228	318	58.7	6.3e-16
PF10551.6	MULE	Domain	420	511	86.5	1.2e-24
PF04434.14	SWIM	Domain	698	731	26.3	3.8e-06

Gene Ontology

Accession	Ontology	Name
GO:0005488	F	binding
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0007623	P	circadian rhythm
GO:0010017	P	red or far-red light signaling pathway
GO:0010218	P	response to far red light
GO:0016620	F	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0044710	P	single-organism metabolic process
GO:0044763	P	single-organism cellular process
GO:0048518	P	positive regulation of biological process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K17604	ZSWIM3; zinc finger SWIM domain-containing protein 3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network