result

Gene information

Detail information of AfisC3G06694

Location

Gene	Chr	Start	End	Strand
AfisC3G06694	chr3	1195824960	1195827177	-

Sequences

CDS

Protein

Gene

>AfisC3G06694
TGCGAACATGTAAAATTCTGAAAATTTTCAAAAATTGTTAATTTCCCTCCATACCTAAACCTTTCTCTTTTCCTTTTTCTCCAACCCAACTGCTCTTGTATTATTACTTTCCAAACTTTACCCTTAAAACCCTAGTTTCATCCTGTGAGCTTTCTTCCCCCAAATTCCACCAAAATTTACCCAATTGTAATTGATTTTTAACAAAATTTTCGATTTTATTGCAGACTTCGAAGCAGATGGCAGGCCGTAAGCCAAAGGCGAGCTCCTCTAAAGCAAGTGATAGCAAGTGAGCAATTTTGATTTCCAATTTTGGGTTGAATAAATCCATTAAGTTCCGATCTACGACTTCTTATCCATTTTTTGTCTGAATTTCGAAGGCTTGCGGTGAAAAAGGGTGGAAAAAAGGGAAAAGCTGAAAAAGATCCAAACAAACCAAAAAGGCCACCTAGTGCTTTCTTTGTCTTCATGTACTGTTTTTTTTCCATCAAAAGAGAAATTTAACTTGCGTATACTTTCAAGATAAAGTATCAACACAAGTTATATTGCTTGTTTGTGTGATTTTCAGGGAAGGATTCAGGAAGGAGTTTAAGGAGAAGCACCCTAAAATTAAGAGCATGGCTGCTGTAATTTATAAAATTTCTTTGTTATATATATATATATATATATATATATATATATATATATATATATATTAAGTTTGTATATTTTTTGATTGTATTCTGGTATTAATTAGGTTGGAAAGGCTGGTGGAGAAAAGTGGAAATCACTTTCGGACTCTGTAAGTTTTTATATTAATGTTGAATAGTTGCAGCAACCCTGTATTGCGTTGGGATTTAAATATATGAACGCCTTGTTTATCAATTATAGGAGAGGGTTCCTTATGTGTCTAAAGCCGAAAAGTTGAAAGCAGAGTATGATAAAAAGATTGCTGCTTATAACAAAGGGGAGAAGGTACAAATCCATTGACTTAAGGCTAGTAATTCAGTTAACTATTACTAATAGTAATGTTATGCCATGTAATTTTGCAACCACTTGCTGTTCACTGCTCCATCACTGGTTTTATCTTTTTAAATTAAGAAATTAGTGATACTATTTACACTTAAAAATACTCTGAATTCGGTAGGCAGTGAAATGCTGCTTACTCTTTATTATAGTCAGCAACTTGTTGTTAACTGCAATGAAGAGCATACATATTTCCACCACATATACATACATGTGTACACCCACACACACATTCAACTGCTGGGTGCAATGAAGGTTCAACGGCATTCAAATGCAGATTGAAATTGGGCAATTTAAGTGTATTTGATGTGGATAACATCACCGTATGAAATTGCTTATAGGCACTAAATGCATGCATTTCTGAAGTCTTTTTTTTAATAAAAAGTACATGTTCTAGTTCTACTTATCAAGTTTCATTATAAGTGGAATAGATTCATCTACCTCGATTCATTTCAAAGTTAGATGTATTCACTTTGGAGTTTAAGCATAAATGCTCATTTGTCAAATTTTATAGTTTTTAAGTCTGCTGAAATATTTTTCTTTCCTTTTTGTTTGTTGAGTTCTTATGATTCTAGAATGATATGCAGCCTTATACAGACTACAGTATATTACCATCGAATTACGTTTGTTTCCTTTTTGTATATCGAGTTCGTATGATTCTAGAAAGACATGTAGGTTTGGTATAATATATTGCTTTTGAATTACATTTGTTACATTTGATTGCTAACTTGTGTTTATCAGTTGCCAAGGCTAAATCTTACTGTCTTTTTTCTATGTTTAAAATGCCAAGGCCGAAGAGGAAGTTGAAGAGTCTGATAAGTCAAAGTCTGAGATCAGCGATGACAATGAGGAAGGAAGTGGAAGTGAAGAGGTATAACTTTGATTAGTGTAGCTCCATTGAATGGTACTGTTCAACTTTATTTCTTTCTTAAATGTACAATATTGTTGTTGAAATGCAGGAAGAAGAGGATGACTGAAGATGGTGTAGCACTTTTTTGTGTTTAACACGTGCTTTTATTTAGTTATGTCTCACTTCTTTTATCTTAGGCAAATGTAAGAAGTGAGCTTTATGTATTGATCTTTTGAACTAGAACCCATGCACTGCTGTATTGCGGATAGTTAACTTAATGTACCAGAGATTAGTTGTAGTTCATTTCGGATAATATTTCAAAGTTGAAATGGTTCTCTCTAGCTTTATTGTTTTATGATCTTAGCG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020261610.1	3.4e-38	DNA-binding protein MNB1B-like
Swissprot	P40619.1	1.5e-27	HMG1/2-like protein
trEMBL	D6MK10	1.4e-33	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G20696.3	61.15	1e-34	141	HMGB3;NFD03;NFD3	high mobility group B3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06694	AT1G20696.3	139	48	3	1	136	1	136	61.15	1e-34	141
AfisC3G06694	AT1G20693.2	139	57	1	2	139	4	142	58.27	7e-34	139
AfisC3G06694	AT1G20696.1	128	42	3	1	125	1	125	62.50	4e-32	133

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00505.16	HMG_box	Domain	36	105	80.4	8.5e-23

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0005515	F	protein binding
GO:0000400	F	four-way junction DNA binding
GO:0000405	F	bubble DNA binding
GO:0000790	C	nuclear chromatin
GO:0001819	P	positive regulation of cytokine production
GO:0001934	P	positive regulation of protein phosphorylation
GO:0002250	P	adaptive immune response
GO:0002252	P	immune effector process
GO:0002755	P	MyD88-dependent toll-like receptor signaling pathway
GO:0003682	F	chromatin binding
GO:0003690	F	double-stranded DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006334	P	nucleosome assembly
GO:0005829	C	cytosol
GO:0007166	P	cell surface receptor signaling pathway
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0010197	P	polar nucleus fusion
GO:0042981	P	regulation of apoptotic process
GO:0030334	P	regulation of cell migration
GO:0030527	F	structural constituent of chromatin
GO:0032392	P	DNA geometric change
GO:0033993	P	response to lipid
GO:0034123	P	positive regulation of toll-like receptor signaling pathway
GO:0034134	P	toll-like receptor 2 signaling pathway
GO:0034142	P	toll-like receptor 4 signaling pathway
GO:0042592	P	homeostatic process
GO:0043277	P	apoptotic cell clearance
GO:0043542	P	endothelial cell migration
GO:0044093	P	positive regulation of molecular function
GO:0044378	F	non-sequence-specific DNA binding, bending
GO:0044710	P	single-organism metabolic process
GO:0048513	P	animal organ development
GO:0050663	P	cytokine secretion
GO:0050790	P	regulation of catalytic activity
GO:0051054	P	positive regulation of DNA metabolic process
GO:0051103	P	DNA ligation involved in DNA repair
GO:0051129	P	negative regulation of cellular component organization
GO:0051223	P	regulation of protein transport
GO:0051271	P	negative regulation of cellular component movement
GO:0097100	F	supercoiled DNA binding
GO:1901224	P	positive regulation of NIK/NF-kappaB signaling
GO:2000026	P	regulation of multicellular organismal development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11296	HMGB3; high mobility group protein B3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network