result

Gene information

Detail information of AfisC3G06698

Location

Gene	Chr	Start	End	Strand
AfisC3G06698	chr3	1196562236	1196571232	-

Sequences

CDS

Protein

Gene

>AfisC3G06698
AAATTTTCCATTACCGTTTTTTAATTTCCCTATTTCAACCACAAACCCTGATACCATTTGGTAAGCTCTCCTTCCCCCAAATCATCCGCTTTCGCCTCCATCTTTAATTGAATTCGTTCAATTTCGTTTGTAGATTTTGAAGAAGATGGCAGGTCGTAAGACAAAGGCGATTTCCTCCAGAGCAAGTGACAACAAGTGAGTGTTCTCTTTCTCCATTATAGAATAACAGGATTAGATCTGTAGATTTTTACATGAATTTGTTTGATCCTCAAAGGCTTGCTGTGAAGAAAAGGGAGAAAAAAGTCAAGGCTGCAAAGGACCCGAACAAGCCGAAGAGGCCGCCTAGTGCTTTCTTTGTCTTCATGTAATTGTTAAATTCAATGCGAATTTGTTTATTCTTTCATGGCGGTGAATAAATTATTTTGATGAATTTTATTTGGTATATTTAGGGAGGGATTCAGGAAGGAGTTTAAGGAGAAGAATCCTAGTAATAAGGGCGTTGCTGCTGTAATTTTTTTAGAAAATTATCGTTAATTGGCTTTTGTATTTTAGATCAGACTATCATACTTGTTGGTTTTTTCATTTCGAAATTAATTAGGTTGGGAAAGCTGGTGGAGAGAGATGGAAGTCTATGTCCGATTCGGTGAGTTTTTTTTTTTTTTACTTGTAAATTGTTCAATGTGATTAGCTGTTTGGCTCGATGTATTATTTCTCATATATTGATTATTAACTTCAGGACAAGGCCCCATATGTGGCCAAAGCTGAAAAACTGAAGGCAGAATATGACAAGAAGATCAGTGCCTACAACAAGGGAGAGAAGGTATAATACTTTATTTTTTACGCTCAACTGCACTGTGGATGTGTGTTTGTTTTTATAGTAGTTTCATTATTTTACAATTAATTAGGACAGGATGTATTTTATCTGAATTATTGTGAGAGGTTTTACTCTGATTTATCTAAATCTATTTCCTATTTTTGATATAAGTTAAGATGTAACTACTGAAGTTTTTTTGGGGTTGTTTTGCATAATTTGCTAGATTATTGAAGTCAAATTTGAAATTGACTGATACTACCATCTAGATTATGCCTCTGCTGTCCACATCTTATGAACTCGTGCACAACATTTTATATTTTCACAAGTTTGTCACAATATATAGAATCAGCATGTGATTGCTATTGATATTTAATTATCCAAAGAAGCGAAGGATACTTTGTAAACCTGTTGCTCTATCAGTACGACATGTGAATGTATGCGTTTGTTTTCCAGTATCATAAAGTGTAAAGACATAAGTTGATTCGAGCTATATGTTGTTGGAATTCCTTAAAAAGATAAAATTGAATGATATATACAATAGTCCCACATTGCCAAAAATAAGAGAAGTTTCATAGATATATACCAATTCCTCAAACCCTATATTGGCCCTTAGGGTCAGGTAATTTTGTGCGAGGGGGAAGACGTATATCTTATGACCAAAAACACACCGCGCGCCGCCCGCCCGTCCCGTACCGGGCCGGGCTTGGGCTTGGGTCTAAATGAAATCTTATTTTTGCACAGAAAAACAAGGCCGGTTTTGAACAAGTTTTTCTGAAGAGGTGTGACCTCTGGTGGACGGTAGCAACGGATATAAACGGACGCGGCCCGTTTAAAACGAACAGTTATGCGCGGTTCAAACGAACAGACGCGGCTGTCTGAAGGGATGCAAACTGGACTATAAAAAGGACAGAATACTGATCACATTCTATCAATTCGAAATTCCAGTTTTCTATCTTCTTCTTCCTCCAGACTACTGCTGCCGTATCAAACATCGCAGAGTGACATTGCTCGTTACAGTTTCGTGCAGAATCATTCTGTTGTATCTTGGGAAACTTTGGAAATAAAAGTTTTAAGGAAATTGCTAAGGCAAGCCTCAGAATTCCTTTGTTATACGGTTACATTATTCTGTTTTTCCTTCGTTTGAATACTGCACATCTACATCTTAAAACTTTTACAAAATTCGTAGAATTTTGTGCACTCATACAGTATTCCGTCGACTGGTTATCGTATTCGGTCCACTGGTTACAGTGTTTTTATCACTGATCTAGAAAGTTGCGAACTTTCTGCTATTCAAACTTGTCTGCGTACAGTTTGCTATCATACATTTCCTAAGACTGTTTCTGTTGCAACAGGAAATGGCAGCGGTAGAAATTCCAAACAAAAATGCTACCCACAACAAACCAGATCCATTTAAGGGAGACGGAGATGATTTTCTGACATGGCAGAGTCAGATGCTCTTTTATCTCACAACCCTTGGTCTGCAGAAGTATCTTGATGAAGATGAACCGGTGCCACCTACACCAGGCAAAACCACTGCGTCAACTGAGAATGCTAATATTGATGCATGGAGGCACTCGGATTTCTTGTGCAGAAATTACATCCTTAACTGTTTGGATAAGGTTTTGTACAAAGTTTATCAGCCACTCAAGACTGCGAAAGCTCTCTGGAATGCGCTTAATGCAAAGTACAAAACGCAAAACGTGAGCCTGAAGAAATTCATCGTAGACAAATTCATGGACTACAAGATGATAGACTCAAAATCTGTAACTGCACAAGTGCAAGAACTTCAGATTATCATCCACGAACTGGAATCAGAAGGCCATCAAGTTGGGGAATCCTTTTTAGTGGAAGCAATAACTGGAAAGTTGCCACCGTCTTGGAGAGACTACCGCAACTATCTGAAGCATAAGAAGAAAGAGATTTCTCTACAAGACCTCATCGTACGTTTAAAGATAGAGGCAGATAACCGTGGAGTTACAAAACAAACCGAGGAGGCGTTTGTAGCAGAAGGGTCAAAGAACAAAGGCCACTTCAACAAAAAGAAGAATTTCTCAAAGAAAAGAAAAGCTCCTGAAAACAAACCAAAAGACAACAAACAAACCAAGAAGTTTAATGGTGAGTGTTGGGTTTGTGGTAAGACGGGACACGCCGCTAGAGATTGTCGACACAAGAAGCAGAAAAATTCTGAAGCAAACATTGTGGAAAATATGGATATCGATGAATCCAATTTTTCAGGAGTTGTATCTGAATGCAACTTGATTCAGAATTCTGCACAATGGTGGTTGGACACGGGTGCTACTAGGCATATATGTTCTGACAAATCCGTATTTTCAACCTACACCAAATTAGATCAAGATGAGAAACTCTATATGGGCAATTCATCGGTTTCCATGGTTGAAGGCAAAGGGACAGTCACCCTTAAGTTCACTTCTGGGAAGACTATTAAACTGAATGATGTCCTTCATGTTCCAGATATTCGCAAGAATCTCATTTCTGGATCCGTGCTTTCAAAGAAGGGATTCAAGATGGTCTTCGAGTCAGACAAGATGGTTCTGTCTAAAGCAGGAATCTACATAGGAAGGGGTTACTTATGTGATGGCCTATTTAAGGCAAATGTAGCCGTAGTTGGCAAAAATACTATGTATTCTGATTGTGATATCAATAAAATTGAAGTTTCTTATTTGGTTGAGCATGAAATTTTATTATGGCATGATAGATTAGGTCATGTAAATTTTCGAAAAATGAAAAAGCTTGCAAACTTAGGATTAATTCCTAAATTCCAAATAGATAAAACCTACAAATGTGAGACATGTGTAGAAGCAAAAATGGCTAAGAAACCATTTCATACTATTGATAGAAGTACTGAACCATTGGGAATGATTCATACTGATTTATGTGATTTCAGAAACTTACCTACAAGAGGTGGGAAAAGGTATTTTATTACATTTATCGACGATTATACACGATATTGCTATATATATCTTTTAAATAGTAAAGATGAAGCAATAACATCATTTATAAAATACAAAGCTGAAGTAGAAAATCAGCTGAATAGAAAGATCAAGATATTGAGATCTGATCGAGGTGGAGAATATGAATCACCATTTGAACAATTATGTGCCGAAAATGGTATAATTCATCAAAGAACAGCTCCATATTCACCACAACAAAATGGTATCGCCGAGAGAAAGAATAGAACGTTAAAAGACATGGTTAACGCTATGCTTTTAACTTCAGGCCTACCAACGAACTTGTGGGGGGAAGCCCTAAATATGTCTAACCATATATTAAACAGGGTTCCTCATAGCAAAACAGGAACAATCCCATATGAGTTATGGAAAGGACACCTACCTAGCTTCAAATACCTCAAAGTGTGGGGGTGTTTGGCAAAGGTTCCAGTTCCGCCTCCCAAGAAGGTCAAACTTGGACCAAAAACTATAGACTGCTACTATCTAGGCCCAGCTGAAAATAGTAGTGCCTATAGATTTTTAGTTTTCAAGTCTGATATAAATGACATCTGTGTAAATACAATCATGGAGTCAAGAGATGCTTCATTCTTTGAAGATGTTTTTCCACATAAAAGAAATGATGGCAATCTTGCCTCAAAAAGGACAAGAGATGACAGAAATAAACCACATGAAGATGAAACTCATCGAGACAAAGATGAAGTTGAACTAAGAAGAAGCGTAAGGGCACGAACTTCCAAGTCATTCGGCTCGGAATTTCTAACTTACGTACTAGAAAATGAACCTCAAACATATAAAGAGGCAATGTCTTCTTCTGATTCTTCCTGTTGGAAAGAAGCAATCAAAAGTGAGATTGATTCAATTCTAAGTAATAAAACTTGGGAAATAGTTGATATTCCCCCTGGAATAAAACCGATTGGCTGCAAATGGATTTTCAAGAAGAAAATGAAACCGGATGGCTCTATTGATAAATATAAAGCCAGATTAGTAGCCAAAGGATATCGTCAAAAAGAAGGAGTAGACTTCTTTGATACCTATTCACCGGTAACACGAATAACCTCTATAAGAATGTTAATAGCAATTGCATCTATCTATAATCTAGAGATTCATCAGATGGATGTAAAAACAGCATTTTTAAATGGAGATCTCGATGAGGAGATTTACATGGAGCAACCTGAGGGTTTCATTTCCAAAGGAAATGAAAAGAAAGTATGTCGATTAGTAAAATCACTATACGGACTAAAACAAGCTCCTAAACAATGGCACGAAAAATTTGACAGTGTCATGATGAAAAATGGTTTTCGTATAAATGAATGTGATAAATGTGTTTATTACAAACAAGTTGGACAATCATTTGTAATGATCTGCCTATACGTTGACGATATGCTAATCTTTGGTCCTAACACTAAAGTAATAGAGACCATAAAGAAGATGTTAATCAACAATTTCGATATGAAAGACTTAGGAGTTGCCGATGTTATTTTGGGAATCAAAATAATAAAAACACCTGATGGAATTGAATTATCTCAGTCACACTATGTAGACAAAGTGATTGAAAAATTCCAAGACTATGGAATTAAAGGAGTGAGAACACCTTTTAATCCATCAGAAGTACTGCATAAAAACACTAATGAGAGTGTAATGCAACTGGAATACTCTCGTGTAATAGGATGTCTCATGTATCTCATGAATTGCACAAGACCAGATATAGCTTATGCAGTAAGTCGACTGAGCAGGTATACAAGCAATCCAGGAAAGGAACACTGGAAAGCACTAATGAGAGTGCTTGGATATTTAAAAAATACCGCTAACTATTCCTTACATTATGGAAAATATCCTGCCGTCTTAGAAGGGTATAGTGATGCAAACTGGATTGCAGATTCAGAGGAATCAAAATCAACAAGTGGTTATGTCTTTACCCTAGCAGGGGCAGCAGTATCATGGAAATCTACTAAACAAACATGCATAGCTCGATCCACTATGGAATCAGAGTTCATTGCATTAGATAAAGCAGGCGAAGAAGCAGAATGGCTTCGTCACTTTTTAGAAGATATTCCGTTCTGGCCTAAACCTGTACCGGCCATATGCATACACTGCGATAACCAAGCAGCGCTAAGCAGAGCGCACAACTTTGTGTATAATGGAAAGTCACGACATATTCGACGACGCCATAACACAGTTAGGCAGTTACTCTCTAATGGAACTATTTCCATAGATTATGTGAGGACAAATGATAACCTAGCGGATCCGTTTACTAAAGGTTTATCCAGAGAGAAAATTGACTGCGCATCGAGGGGAATGGGTTTAAAAGCCTAAACCAACAAGAGTTAACTTATACGGAAACCTAACCTAGCGACTGGAGATCCCACAGACTAGGTTCAATAGGCAAACCAGTTATGATTAACTCAAGATGTAATGCATTTGTTTGGACTTAGTCCTACCTAATTCCTATGATGCAAAATAAAATGCATACCTACAGAAGTATTAAAAGGTTAAAGCTATGCTTTTTAATGATGTCCATATCTTGAAAATAACAAGTGGGGTATATGTAGGATACTCTACATGGATGCGATCACCTATGTTAGTGTGAGCTGGGTCGGCTCTATGAGATTATTACAGGCTTATAATTCTCTATAACACTCGCAGAACCAATAACTGTTCAGGACCAAAATGAACACAACCAAGAAATTGGATGAGAAGGGAATCAATGCTTCGTGAAACTTATTGTCTGGTTATACAATAACGGCCGACGGTTCAAGATGAAATAATTCACCGATTAGCCAAGTATATCCGATGAGTTTTAACTAGGGAAAGTTCAAAGTGAAATATCTACTTATCCTCGATATAGCATTATTCCATATGTACTCTGTGATATTCCACTTTGTGTGGGGGATATGTATATTATCATTCATGTGGGGGATTGTTGGAATTCCTTAAAAAGATAAAATTGAATGATATATACAATAGTCCCACATTGCCAAAAATAAGAGAAGTTTCATAGATATATACCAATTCCTCAAACTCTATATTGGCCCTTAGGGTCAGGTAATTTTGTGCGAGGGGGAAGACGTATATCTTATGACCAAAAACACACACGCGCGCGCGCGCCGCCCGCCCGTCCCGTACCGAACCGAACCGGGCCGGGCTCGGGCTTGGGCTTGGGTCTAAATGAAATCTTATTTTTGCACAGAAAAACAAGGCCGGTTTTGAACAAGTTTTTCTGAAGAGGTGTGACCTCTGGTGGACGGTAGCAACGGATATAAACGGACGCGGCCCGTTTAAAACGAACAGTTATGCGCGGTTCAAACGAACAGACGCGACTGTCTGAAGGGATGCAAACTGGACTATAAAAAGGACAGAATACTGATCACATTCTATCAATTCGAAATTCCAGTTTTCTATCTTCTTCTTCCTCCAGACTACTGCTGCCGTATCAAACATCACAGAGTGACATTGCTCGTTACAGTTTCGTGCAGAATCATTCTGTTGTATCTTGGGAAACTTTGGAAATAAAAGTTTTAAGGAAATTGCTAAGGCAAGCCTCAGAATTCCTTTGTTATACGGTTAGATTATTCTGTTTTTCCTTCGTTTGAATACTGCACATCTACATATGTTAGACAAGAACATGGGATAAATTGGATTGCAGTCTGATCATTATGCATGTGTAGATAGATATGAATCTCGTTTAAATTTGAAGTAGCACTTTTCACATAGTTGAAAACTTTATGCTTTCACTCTCATTTTTGACAGTAAGATACCTTAAAACAACGACGATCTCAGCAAAAACTGTGGATATCCAATAGGTGCACCGACCCTTGTAACTCGAATAATCGCATTCTTGCTTTTTTTTATGTGCTAAAAATATTTCTTTTCATTTATTGAAGTACTACTGTTTGGTTACAGTTTAACTATGTTTTACTATCTTAGAAGTGGCAGCTTATTAGGTATTTATTGAATTTTGCAAAGAATCAACTGATTATGTTTTAGATGGATTTACCAGATATGTTTGTGGAGATATCGGTCTACAAGCATATTATCTTGTTTTGATATAGGTTTTCTACTCATATTAAACAGACCATCAAAATCGTCTATAACATTTAAAAGTGGTTTGTGTAATCTTGATTGGTTAATGAATTTTTAATTGTTTGTTGTTTAAACCCTAATTGAACTAATTAACTATTATGTGGAATTTCAATATTAATCGTATTTTACATAAAATCTCAGTCCTTGTTGACTAACAAAATATTTCCTGTCTTTTGTTAAATCTTCTGAAATATGTCTAAACAATAACTTGACACCGTATTCTTAATTTGCATTTACGTAAGAAATATCAGCTGTTAACATGAATCAATTTATTATACTGAATCAGAACCAACCTACTATTGCCTTAACTTGACCAAGTGTCATAACCTTAATACTTTGTTCAATTTTTTCAATGAGAGAGGGAGCTGTAATTTTTTGGATACTACAGTATGGTTTTAAAGTAGGCATTGCATATTAGAGTCTAAAAATATTGTATTGTGTTCCGTGCGTGCTTTTAGTACATAAGTTGACACACCTACTTGCAATTTGGTTTACACGTGGAACAATAATAATAGGCTCATGTTAAGGTGTTCAGAAGAAGAATTTCAGAATGATATCAAACATTTGTAAAGTGGACCAACTGTGTCAGTAGGAAAATCATAACTGAGTCACTAAATACTTTATTCAATGTAGGTTCCTGATGACAATGTTGAAGAGGAGGCAGAAACATCTGATAAGTCAAAGTCTGAGGTTGAAGATCAGGAAAGCGGAAGCGAAGAGGTATTATACTCTGCTAAAGTAATCCCTTTATTAAACTCTTGTAATGAGACAGTGCCATTTAACAGCTACTGTTTTGTATACAGGAGGGTGAAGATGATGATTAGAGATGTGTTTTGCACTGAATATGGTTCTAGGTTTTGCTTATCAGTAACTTTTCTCTTTTTTAATTTTGTGCTTCCTTCTTTTGTTATCGTACAACAAAAGGATGAAGTGGGCCTTTACAGCTTATAGGTTTATCTTGTACTTCTGTATTAGTAACTTTTAAAAAGGCATGAAGAGTACTTATTTCTTATGGTTAGTTTTGCAATCCTGGTTCTAAGTAACATATTGGCATATGTTGCTTCTTAATCATTAAGTATGATTTATGATGTTAGTACTTTGTATTGTTTTTATGATTATCTGTGAAGTTAGTAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020261610.1	1.4e-42	DNA-binding protein MNB1B-like
Swissprot	P40619.1	8.3e-29	HMG1/2-like protein
trEMBL	D6MK10	1.1e-38	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G17560.1	56.25	3e-33	137	HMGB4;NFD04;NFD4	high mobility group B4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06698	AT2G17560.2	144	57	4	1	144	1	138	56.25	3e-33	137
AfisC3G06698	AT2G17560.1	144	57	4	1	144	1	138	56.25	3e-33	137
AfisC3G06698	AT1G20693.2	146	53	2	2	144	4	142	56.85	3e-32	134

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00505.16	HMG_box	Domain	36	105	83.4	1e-23

Gene Ontology

Accession	Ontology	Name
GO:0000400	F	four-way junction DNA binding
GO:0000405	F	bubble DNA binding
GO:0000790	C	nuclear chromatin
GO:0001773	P	myeloid dendritic cell activation
GO:0001934	P	positive regulation of protein phosphorylation
GO:0002270	P	plasmacytoid dendritic cell activation
GO:0002322	P	B cell proliferation involved in immune response
GO:0002407	P	dendritic cell chemotaxis
GO:0002755	P	MyD88-dependent toll-like receptor signaling pathway
GO:0003682	F	chromatin binding
GO:0003684	F	damaged DNA binding
GO:0003690	F	double-stranded DNA binding
GO:0003697	F	single-stranded DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006334	P	nucleosome assembly
GO:0042393	F	histone binding
GO:0006265	P	DNA topological change
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0010197	P	polar nucleus fusion
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0030527	F	structural constituent of chromatin
GO:0032392	P	DNA geometric change
GO:0033151	P	V(D)J recombination
GO:0034134	P	toll-like receptor 2 signaling pathway
GO:0034142	P	toll-like receptor 4 signaling pathway
GO:0034165	P	positive regulation of toll-like receptor 9 signaling pathway
GO:0042056	F	chemoattractant activity
GO:0044378	F	non-sequence-specific DNA binding, bending
GO:0044444	C	cytoplasmic part
GO:0044710	P	single-organism metabolic process
GO:0045322	F	unmethylated CpG binding
GO:0048523	P	negative regulation of cellular process
GO:0050786	F	RAGE receptor binding
GO:0050790	P	regulation of catalytic activity
GO:0051052	P	regulation of DNA metabolic process
GO:0051103	P	DNA ligation involved in DNA repair
GO:0097100	F	supercoiled DNA binding
GO:1901224	P	positive regulation of NIK/NF-kappaB signaling
GO:1902741	P	positive regulation of interferon-alpha secretion
GO:1990774	P	tumor necrosis factor secretion

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K11296	HMGB3; high mobility group protein B3	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network