result

Gene information

Detail information of AfisC3G06833

Location

Gene	Chr	Start	End	Strand
AfisC3G06833	chr3	1218933751	1218935680	-

Sequences

CDS

>AfisC3G06833
ATGGAAACTTCATTCTTTGGCCTTCTTAATGGTAGCGAAGACGATTGTAACATGAGCAGCAACTATGACACTAGTATAGGAATTCCAAAGTTTAAAACTATTACTCCTCCATCTCTTCCTATTTCAAATTCCTTGTCGTCTTATTTTGCTACTTTATCTGGCCTCAGCCCCGCGGAGCTTTTGGAATCCCCTATTCTTCTTACTTCCTTCAATAATGTCCTCCCATCTCCAACAACAGGGGCAATTCCATATCGATCTTACGATCCAAAGCCAAATCCTACAGATTACACAAATTACCAACAAAACATCAAAGAAGAAGAACATATGGCATTTAACGACTTTTCGTTCCAATTAGCACATAGAAACAATACCGATGTGCAGAGCAATGACTTGAATAATCAGGCAGAAACAATTCATATTCCTCAAATACTGAAAGAGCAAAAGGGAGCAAATGATGGATACAACTGGAGAAAATATGGACAGAAAGTAGTGAAAGGAAGCGAAAATCCAAGAAGTTATTACAAGTGCACATTTCCAAATTGCCAAGTGAAGAAAAAAGTAGAGAGAAGTGCAGATGGTCAAATAACTGAAATCATATACCGAGGAACTCATACTCATCAAAAGCCTCAACCTTCTAGAAGAAATTCAGGCACCTCTCATTTAATTATGAATAATCAAGCTCGACTTGAAGCATCCGAAAGTTCTTTTAGTGCACCATCTGGCACACCTGAAAACTCTTCTGTATCCTTTGCTGATGATGATGGTGACCTTGATACAAGCTCTAAGAGGAGAAATTTGAGTGTAGATAGTATTGAACATAATGCTAAGAGAATAAAGCAAGAAGGCGATAAGGAGGGAACAAATATAAATGAAACTCGAACAGTAAGAGAGCCTAAAGTGGTGGTTCAAACGACAAGTGATATCGATATACTTGATGATGGATATAGATGGAGAAAATATGGGCAAAAGGTTGTGAAAGGAAACCCTAATCCAAGGAGCTACTACAAATGCACAAGCGCTGGCTGTACTGTGCGAAAGCAAGTAGAAAGAGCTTCACATGATATAAGGGCTGTGATAACAACTTATGAAGGCAAACATAACCATGATGTCCCGCAAGGTCGTGGTAGTGGGGCGGTCAACAGATCATCAACAATTAACAACAATGCTGTTACAACTGCTATTACAAGACCTTCAGTTATCTCTGAACACAGGGATAATCAAGCTCCTTTTACATTGGAAATGCGTCAAGCTCCTGATAGTTATGGCCATGGTTCTATAAATTCTGGGTATGGAAACTCAGATTATAACATGTTTTCTACAACTGGTAATGAAAGGATGGGGGATTCTTTTGTGAATTCATTGCTGCTTTGA

Protein

Gene

>AfisC3G06833
TTCGTACATATCCTTTCTTGCTCTGTAATTACATACCTACATATGCACAAACAAGCATTACTATCTTGTAATTCTCCATAACTTTTCTCTAATGGAAACTTCATTCTTTGGCCTTCTTAATGGTAGCGAAGACGATTGTAACATGAGCAGCAACTATGACACTAGTATAGGAATTCCAAAGTTTAAAACTATTACTCCTCCATCTCTTCCTATTTCAAATTCCTTGTCGTCTTATTTTGCTACTTTATCTGGCCTCAGCCCCGCGGAGCTTTTGGAATCCCCTATTCTTCTTACTTCCTTCAATAATGTAAGTAACTCGGTTTTTTCAATAATATTTTGATACTAATCACTTGATGAATAATTGATTGAACTTAATTATATCTGTATGGTTCTTAATTATAAGTTATGAATAGAAATTAATACAGGTGTGCAATGTAAAGATTATGTTTGAATATTTGCTAGTTTCATAATCATCCTATCTACATCTGTAAAAGAAAAATAGCTTACTTGGTTTTGCGTATGTTAAACAGGTCCTCCCATCTCCAACAACAGGGGCAATTCCATATCGATCTTACGATCCAAAGCCAAATCCTACAGATTACACAAATTACCAACAAAACATCAAAGAAGAAGAACATATGGCATTTAACGACTTTTCGTTCCAATTAGCACATAGAAACAATACCGATGTGCAGAGCAATGACTTGAATAATCAGGCAGAAACAATTCATATTCCTCAAATACTGAAAGAGCAAAAGGGAGCAAATGATGGATACAACTGGAGAAAATATGGACAGAAAGTAGTGAAAGGAAGCGAAAATCCAAGAAGTTATTACAAGTGCACATTTCCAAATTGCCAAGTGAAGAAAAAAGTAGAGAGAAGTGCAGATGGTCAAATAACTGAAATCATATACCGAGGAACTCATACTCATCAAAAGCCTCAACCTTCTAGAAGAAATTCAGGCACCTCTCATTTAATTATGAATAATCAAGCTCGACTTGAAGCATCCGAAAGTTCTTTTAGTGCACCATCTGGCACACCTGAAAACTCTTCTGTATCCTTTGCTGATGATGATGGTGACCTTGATACAAGCTCTAAGAGGAGAAATTTGAGTGTAGATAGTATTGAACATAATGCTAAGAGAATGTAAGTGTTCAAAAAATCCAATATATTTATTTATTTTTTACTAAGGTATGGTTATATTTATTCATCATCAAAGTATAGAATGGATCTAAATATTGTTTGATATGATTAATTCAGAAAGCAAGAAGGCGATAAGGAGGGAACAAATATAAATGAAACTCGAACAGTAAGAGAGCCTAAAGTGGTGGTTCAAACGACAAGTGATATCGATATACTTGATGATGGATATAGATGGAGAAAATATGGGCAAAAGGTTGTGAAAGGAAACCCTAATCCAAGGTGAGGAGCTCGTCGCTAGCCGTTTAAGTTTTCATATAAAATTTATAAACGTAATAAAATATTTTTGCGCAATCTAACAAAGTTTCTTCAATACTAGACTAGATACTGAAAAGAATATTTCTTGACTTTAGGAGCTACTACAAATGCACAAGCGCTGGCTGTACTGTGCGAAAGCAAGTAGAAAGAGCTTCACATGATATAAGGGCTGTGATAACAACTTATGAAGGCAAACATAACCATGATGTCCCGCAAGGTCGTGGTAGTGGGGCGGTCAACAGATCATCAACAATTAACAACAATGCTGTTACAACTGCTATTACAAGACCTTCAGTTATCTCTGAACACAGGGATAATCAAGCTCCTTTTACATTGGAAATGCGTCAAGCTCCTGATAGTTATGGCCATGGTTCTATAAATTCTGGGTATGGAAACTCAGATTATAACATGTTTTCTACAACTGGTAATGAAAGGATGGGGGATTCTTTTGTGAATTCATTGCTGCTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020271607.1	3.8e-107	WRKY transcription factor WRKY24
Swissprot	Q6IEQ7.1	5.2e-93	WRKY transcription factor WRKY24
trEMBL	A0A7S8F9L2	6.7e-122	Abiotic stress-related transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G38470.1	56.16	2e-78	289	ATWRKY33;WRKY33	WRKY DNA-binding protein 33

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G06833	AT2G38470.1	292	102	7	145	414	178	465	56.16	2e-78	289
AfisC3G06833	AT4G26640.2	251	81	6	141	376	206	445	57.37	1e-73	274
AfisC3G06833	AT4G26640.2	72	30	2	310	379	209	279	54.17	1e-14	77.8

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	151	207	87.7	4.5e-25
PF03106.12	WRKY	Domain	312	369	89.3	1.4e-25

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0008270	F	zinc ion binding
GO:0009409	P	response to cold
GO:0009651	P	response to salt stress
GO:0009791	P	post-embryonic development
GO:0009863	P	salicylic acid mediated signaling pathway
GO:0009941	C	chloroplast envelope
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0044702	P	single organism reproductive process
GO:0048608	P	reproductive structure development
GO:0070370	P	cellular heat acclimation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13424	WRKY33; WRKY transcription factor 33	EC:-	MAPK signaling pathway - plant	ko04016
K13424	WRKY33; WRKY transcription factor 33	EC:-	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network