result

Gene information

Detail information of AfisC3G08870

Location

Gene	Chr	Start	End	Strand
AfisC3G08870	chr3	1577452218	1577453433	-

Sequences

CDS

>AfisC3G08870
ATGTTTGCCCTTCTCCGTAGTAGAACCGTCGCTAGAAATCCAATTTCATGCCCAATAATCGGAAATACTCTTGGGCAATTTATATCGAAATATTCGTCAGTTTCGCAAATTTGTGAAAATCGAATCAGAAAAGCTCCGTCTTCAGCAAGAGCGAAAGATACAATCGCTTCACTTAGCAAACTTCTCAAATCATACGAATTCACAGATCCCCAAATCGCAAAATTCTGCACTAAATTCCCGATTAAGCCCTCGTATGATCCGATAAATGTCATAAAACCTAAGTTGGATTTCTTCCTTGACATTGGGCTTTCCCACACTCAACTCGCAAAGTTCATCTCTTTGGATCCCAGTTTGATGAAATCAAGCTTGGAAAAACGAATAAAGCCAAACGCCCTTCTGCTCAAAGACTTCTATGGAACCGAGGAAATTCTAATTCGTGCTCTTTTTAGCTGCTCCAGCTTATTACAAAGCAAATTAGAAAACAATTTCTTCTCCAATGTTAGAACAATGACAGAACATGGAGTTCCTCGTACCAATATTATAAAGTTCGCCAGCAAATATGCAAGATTGCTAAAATTTTCTGCAAAAAAGTTTAAGAAGATGGTCCAGTTAGTCGTTTCTAAGGGATTTAACCCATGCTCGACCTTGTTTTGCTCAGCAGTTCAAATAGTTTTAGGATCAAGTCCTGCTACATGGAAGAAAAAAGAGAGTTTGTATACGAATCTAGGATGGTCTGAGAAAGATGCCGTCTCCGCATTCTTTAAACAACCATGGTGCATGGCTGCATCAGAGGGGAGGATTAGACAGATAATGGATTTTTATGTTAATGAAAGGCAGTGTGACCCATCTTATTTGGCGTTTAACCCTGTGCTTCTTAGGTTAAGTTTGGAAAAGAGGATCAAACCAAGGTGTCTTATTATCGATATACTCGTGAAGAAGCAATTGATTAAGAAGAGGTATGCATTTTGGTATTTGATGATTAGTAACAAGGATTTCTTGGAGAAGTACGTGGTGCCTTACCAAGATCTCGCACCTGAGATTCTTCATGCATACAATGGTAAATCATAG

Protein

Gene

>AfisC3G08870
CCTAGAATCCAAAAAAATGAAAAAATGACGGGTTCTTCTTCCAAGTTCATACCGTACATTCATTAATGGAGAAAGCAGAAACCCAAACAAAAACTCTGGCACTGTAAGTCTCACATCAACTATCTATTTTGCTTCATTCAGTTGACAAATGTTTGCCCTTCTCCGTAGTAGAACCGTCGCTAGAAATCCAATTTCATGCCCAATAATCGGAAATACTCTTGGGCAATTTATATCGAAATATTCGTCAGTTTCGCAAATTTGTGAAAATCGAATCAGAAAAGCTCCGTCTTCAGCAAGAGCGAAAGATACAATCGCTTCACTTAGCAAACTTCTCAAATCATACGAATTCACAGATCCCCAAATCGCAAAATTCTGCACTAAATTCCCGATTAAGCCCTCGTATGATCCGATAAATGTCATAAAACCTAAGTTGGATTTCTTCCTTGACATTGGGCTTTCCCACACTCAACTCGCAAAGTTCATCTCTTTGGATCCCAGTTTGATGAAATCAAGCTTGGAAAAACGAATAAAGCCAAACGCCCTTCTGCTCAAAGACTTCTATGGAACCGAGGAAATTCTAATTCGTGCTCTTTTTAGCTGCTCCAGCTTATTACAAAGCAAATTAGAAAACAATTTCTTCTCCAATGTTAGAACAATGACAGAACATGGAGTTCCTCGTACCAATATTATAAAGTTCGCCAGCAAATATGCAAGATTGCTAAAATTTTCTGCAAAAAAGTTTAAGAAGATGGTCCAGTTAGTCGTTTCTAAGGGATTTAACCCATGCTCGACCTTGTTTTGCTCAGCAGTTCAAATAGTTTTAGGATCAAGTCCTGCTACATGGAAGAAAAAAGAGAGTTTGTATACGAATCTAGGATGGTCTGAGAAAGATGCCGTCTCCGCATTCTTTAAACAACCATGGTGCATGGCTGCATCAGAGGGGAGGATTAGACAGATAATGGATTTTTATGTTAATGAAAGGCAGTGTGACCCATCTTATTTGGCGTTTAACCCTGTGCTTCTTAGGTTAAGTTTGGAAAAGAGGATCAAACCAAGGTGTCTTATTATCGATATACTCGTGAAGAAGCAATTGATTAAGAAGAGGTATGCATTTTGGTATTTGATGATTAGTAACAAGGATTTCTTGGAGAAGTACGTGGTGCCTTACCAAGATCTCGCACCTGAGATTCTTCATGCATACAATGGTAAATCATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_019701790.1	2.6e-63	transcription termination factor MTERF2, chloroplastic isoform X1
trEMBL	A0A6I9Q933	1.9e-63	transcription termination factor MTERF2, chloroplastic isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G07900.1	32.88	1e-41	167		Mitochondrial transcription termination factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC3G08870	AT5G07900.1	295	196	2	61	353	107	401	32.88	1e-41	167
AfisC3G08870	AT1G21150.1	320	203	6	40	353	77	388	32.19	1e-33	140
AfisC3G08870	AT5G64950.1	303	203	4	57	351	73	375	30.36	6e-26	115

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	60	210	44.8	6.9e-12
PF02536.11	mTERF	Family	116	333	70.0	1.5e-19

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15032	MTERFD; mTERF domain-containing protein, mitochondrial	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network