Gene information

Detail information of AfisC4G00525

Location

Gene	Chr	Start	End	Strand
AfisC4G00525	chr4	86604840	86605115	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	THU60051.1	1.6e-20	hypothetical protein C4D60_Mb07t08540
Swissprot	Q7G1L2.2	1.6e-17	Protein RELATED TO APETALA2 6
trEMBL	A0A4S8JE35	1.1e-20	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G13330.1	58.23	2e-20	93.6	Rap2.6L	related to AP2 6l

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G00525	AT5G13330.1	79	31	1	5	83	23	99	58.23	2e-20	93.6
AfisC4G00525	AT5G61890.1	63	19	1	21	83	90	150	66.67	1e-19	91.3
AfisC4G00525	AT2G33710.2	61	16	1	21	81	70	128	70.49	2e-19	90.5

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	20	69	43.0	3.7e-11

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0050832	P	defense response to fungus
GO:0005730	C	nucleolus
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009749	P	response to glucose
GO:0009751	P	response to salicylic acid
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0016604	C	nuclear body
GO:0019760	P	glucosinolate metabolic process
GO:0034059	P	response to anoxia
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0048825	P	cotyledon development
GO:0051301	P	cell division
GO:0070483	P	detection of hypoxia
GO:0071497	P	cellular response to freezing

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network