result

Gene information

Detail information of AfisC4G00743

Location

Gene	Chr	Start	End	Strand
AfisC4G00743	chr4	124468987	124471121	+

Sequences

CDS

Protein

Gene

>AfisC4G00743
AAAATACTCAAGTACACCTCCCCTCACCATGTTCTTGCTAAGAAATATACCACTTACAAGAAGGAGGTACTCCATAATTATTTCATGGATAGAAACCATAGGATTCTTTGTTCTCCTTCTTATCGACTAAGTATCTTTCAATTCACTATAAACACGTTGAGGGGTCCTTTTAATCCCTTATATTTAAACAGATATCTCACTCAAACTCATTCTAAATCTTTTATCATTTTCTTCTAATGGGATGCAATGGCATGCCATCTTCGTTTTTCCCTCCGAAGTACTTGTACCAGATGCAACTATCTCCTATTGAAGAGAATCATCATTTACTTCCAACAATGCCACAAGACTTTAGAGGTAGATTTATATATTTTTTGTTTAGATGTTTCAAAATCGAATGATGTACTCAAATCTTTTATAGGTGTAGCATCAATACTTGGAAAAAGGTCAGGTATGACCTTTGATGATATGGGCGGTGAGGATGAGCTTTCAGACGATTCTCAAGCAGCGGAGAAGAAAAGAAGATTGAACCTTGAACAAGTAATTATCCCAGCGTTCACTTTTGACACTGTTTCATTGGTATATTGCAAGATTTTCATTATTTCTATACATATGTGTGTGTACTTACAGGTGAGGACACTAGAAAAGAATTTTGAGATTGGAAATAAGCTCGATCCGGAAAGAAAGATGCAGTTAGCTAGAGCGTTAGGAATGCAACCAAGGCAAATAGCGATTTGGTTTCAAAATAGAAGGGCTAGATGGAAAACTAAAAAATTGGAAAATGATTATGAGGGTTTGAAAAGGCAATTTGATATTGTTAAAGCAGAGAATAATGCACTTCATGAACACAACAAAAAATTACAGACTGAGGTAAAAACATTGTGAACTTTTGGTTTCATTGATTCAATCTTCTTTATTTATTTATTTTTCTATCATACATATCAAATGAATAAGTTTAATGCTGAGATAGTAAAACTTAACTCTTTACATAATGAATTACTTTTCAGACAATGCAATAATTGATTACGAATAAAGGAACTGACTTTGATTTTCTTCCTTGAATCGAGCATGATTCAAAGAAGAAAAATAAAAAAATAAAAATATTGGCATTATCCTACTGTTTGTTCTCTCTTCAAGATGAATCGCTGGACTCTAAAATGGAGATGCAATTTTTATATCACGAGTTAACGACTTAATCATCATCATGGAGAATTTCAAAAAAATAATACTATTTCATTCATAAAAGAGATACCTGAATTCACATTTGCATATCCACTCACTGTTATTGAGCAATGAAGGAAGCATCTTTGTTCGTTTTGCTTTCAAGGCATAAGTAAACGAACTATTGAACAGTGAAAAAAGTTCTTCATGGTTGATAATAAAGGGAAAAAAAAGTACTGATGAGTTATTAATTCTTGAAACATTCCCGTTTTCTAAACTCTAGTTATGATTCCATATATTTGACGATTAAGTAGTTTAAGACATAAATTTATTTACTGCATAGCCAAATAGATCTTAATATTTTATCATTTTACTGATTGTTAGTTTTTACAGTTATTTGCACTGAAAGGGAGAGAAACAATAGAACCTATCAATCTAAACAAAGAAACAGAAGGCTCTTCGAGTAATAGAACTGAAAATAGCTCAGACATCAACTTAGAAATTTCAAGAATGCAGCATGCCACCGATAGCCCTGGGCATGGCAATGTAAATCAAGGTATTGCATTTTTTCCTTCTTATAAACAACAAGCTATGACTCAACTCATTCAAAATTCTATGAAGAACGAGCATGGTTACGCTACCACTGTAGAAGAGAACTTATGCAACATTTATGGAGGAATGGATGATCAATCTTCGGCATTCTGGGCATGGTCAGAACAACATAATTTCCACTGAGAGTTTGAAGTAGCTTAAGACGGAGTTTGGAGTTCAACTTTTAAGAATAAAACATCCATAAAAGTATATTGTTATTATATATATTAATTATTGTTGTGTTGTATTTGGCTATAGAGTTGTTGTTTCAGGTAATATTGTTTATGTGATCAGAAGTAATTGAGTTTGTAGAAATCTTCTACTAAAATTGAAGTGTGTAAAATATCCCTTGCCCTTTGTGCATATTTCCGTTATGTTCACATGGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008804470.1	1.5e-71	homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8LC03.2	6.3e-46	Homeodomain transcription factor ATHB-13
trEMBL	A0A835DLE0	1.5e-76	Homeobox-leucine zipper protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G69780.1	52.48	3e-70	261	ATHB13	Homeobox-leucine zipper protein family

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G00743	AT1G69780.1	303	104	14	1	272	1	294	52.48	3e-70	261
AfisC4G00743	AT1G26960.1	280	114	10	1	272	1	255	47.50	2e-55	212
AfisC4G00743	AT3G01220.1	217	88	6	59	267	72	275	49.77	8e-49	190

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	71	124	56.3	1.8e-15
PF02183.15	HALZ	Family	126	166	42.4	5.3e-11

Gene Ontology

Accession	Ontology	Name
GO:0001558	P	regulation of cell growth
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009414	P	response to water deprivation
GO:0009536	C	plastid
GO:0009637	P	response to blue light
GO:0009651	P	response to salt stress
GO:0009739	P	response to gibberellin
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009908	P	flower development
GO:0009965	P	leaf morphogenesis
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network