Gene information

Detail information of AfisC4G00939

Location

Gene	Chr	Start	End	Strand
AfisC4G00939	chr4	169057340	169057672	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020586397.1	2.3e-18	DNA-binding protein MNB1B-like
Swissprot	P40619.1	2.8e-16	HMG1/2-like protein
trEMBL	A0A8K0N7V7	3.4e-19	HMG box domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G20696.1	50.82	2e-20	93.6	HMGB3;NFD03;NFD3	high mobility group B3

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G00939	AT1G20696.1	122	48	4	1	110	1	122	50.82	2e-20	93.6
AfisC4G00939	AT1G20696.3	122	48	4	1	110	1	122	50.82	2e-20	93.6
AfisC4G00939	AT1G20696.2	106	41	3	1	96	1	106	51.89	3e-19	90.1

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF09011.7	HMG_box_2	Domain	28	93	36.0	7.3e-09

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000400	F	four-way junction DNA binding
GO:0000405	F	bubble DNA binding
GO:0000790	C	nuclear chromatin
GO:0001819	P	positive regulation of cytokine production
GO:0001934	P	positive regulation of protein phosphorylation
GO:0002755	P	MyD88-dependent toll-like receptor signaling pathway
GO:0003682	F	chromatin binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006334	P	nucleosome assembly
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0030527	F	structural constituent of chromatin
GO:0032392	P	DNA geometric change
GO:0032879	P	regulation of localization
GO:0034134	P	toll-like receptor 2 signaling pathway
GO:0034142	P	toll-like receptor 4 signaling pathway
GO:0044378	F	non-sequence-specific DNA binding, bending
GO:0044444	C	cytoplasmic part
GO:0044763	P	single-organism cellular process
GO:0044765	P	single-organism transport
GO:0048523	P	negative regulation of cellular process
GO:0048731	P	system development
GO:0051052	P	regulation of DNA metabolic process
GO:0051103	P	DNA ligation involved in DNA repair
GO:0065009	P	regulation of molecular function
GO:0097100	F	supercoiled DNA binding
GO:1901224	P	positive regulation of NIK/NF-kappaB signaling

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network