result

Gene information

Detail information of AfisC4G01073

Location

Gene	Chr	Start	End	Strand
AfisC4G01073	chr4	193269427	193272314	-

Sequences

CDS

>AfisC4G01073
ATGGAGAGTCAAAATGAGAAAATTTATGTATCTGTAAGCAGAAATATGGAAGGAGCCGAAAAGATCCTGAAGTGGGCATATAATCGATGGAGCAGTCAATCGGTCTCCTTTGTCATCCTTCATATAAACACTAATACCTTGGATTATGTACAAACTCCTTTTGAATTCTTAGTTGGAAAGTTTCCATCTAGTTCGCTAAATGATGTGATGTTGGAAGACTACAAGGCTAAAGAAAACGAGGAAGTGGACAACCTCCTGCGCAAATATACATCTTTAAACTCCCAGGTGAGAGTAGAATTATTAAAAGTTGATGCATCTGATGGCTGTGTCCCTAAAATTATTGTTAGCTTAATCGAAAGTCTTGGAATCAAGAAGTTGGTTATGGAATTCAAAAACACGAAATCAGCATCCTGGAAGGGAAGATATAAGAATATTAACTCTTGCTATGTACAAAAGCACAAGCCAAACTTTTGCGAACTATTTATTGTATGCGGTGGACAACTAGTTTTATTCAAAGAAGATAATCTCGATGAAGGCTTTTCCTTCGTCCAAGAAAATGGAGCCATAGTTGCAAATTTTAGGAAGAAATCTAAAGAAAAAGGAAGTTTCAAAACGTGGTGGAGTAGAAAACCTGTGGATACTTCGAGAAATGACGTTTCTTTGGCATTATGTGTTGATAACGATAATGTGGATGTAGTAAGTTATAAATGGGAAGACTGTGAAGAAGAGATTGAGATATACGTACGAAGTTTAGAAGAGTTGGAGTTAGGCGATGATACTATAAATAATCAACATTTGCACTCCGCTAAACAGCAGGGCTTGAACAAAGAGGAGATATTGCAAATAATTCAACAAACTAAGTTAAACGTAGAAGTTGACGAAGAAAGAAGAAGAAAAGCCGAACGAGTCATATATTTGTGCAATCAAAGGGTTGAGCAAATAGAAGAAAATTCTAGAGAAGAAATGGCAATGCATGCAAACTTTAATGAAGAGCTAAACAGTACTAAAAACCAGATACATATAACATCAAATAACATCACAAAAAGCAAACTCAGTATAGAATCACAGCATAAACAAGATGAAGAACTTGGATTCAAGCTCCATTGTTATTCATTGCAAAATTTGGTGTTGTCTTCTGAATTTCAAATGTTAGAAAATGAAAAGGTTGGCATGTTCCAGAAAATAAGGGAAACCCGTAAACAAATAGATTCGATGAAGCGGAGAATTGAATTCTACGAAGAAATAAAAGCGATTGATGCATTGAATGGACTTAATTATACATACAAAGAATTTACGGCAGAAGAATTGAGAACTGCAACCAACAATTTTTCAGAGGATAATATGATTTCGTCAATAGTTTACAAAGGAAAGATGGAAAATACAACCGTTGCAGTTCATTTCAAGCCTTCATTGTGTGATTCAGTAGAGAAATTCAAAGCTCAGGTCGAACTGTTGAGCCAAGTTAACCATCCAAATATACACATTATGTACGGTGCATGTACAAAACTCAAGTGCACTGTACTGGAACACATGGAAAATGGAAATCTTCATTCGATTCTCTTCTCTTCGTCTTCAAATAAGCAGATTATCCTTCCATGGAACACGCGTATCAAAATTGCAGCCGATCTTTTATCTGCCATAGGATTTGTTCGTGGCTCACCTATGCAGCATGTACACATCATGCACAACCATCTAAATGCTTCCGATGTGTTCATAGACAGCAAATTCACCGCAAAAATCAGAGTGCTTTGCTATGACATTGCTTCACTAGGACTGATAATTCTTCAGCTAATAACTGGAAATGAAGGAGTCGGAATGGAAGAAGTTAAAGCAGCCATCGAGGAAGGGAGAATAGTGCACATTTTAGATGGGAAGGCAGGAGAGTGGCCTATTGCTTTCGCCAGGTCATTTGCAAAAATTGGAGTCAAGTGCTGTGAACATAAAGAGGAAGTAAATTTTGTGAAGGAGACGGCAAAGGAGATTGATGAATTAAGAGAGAAGGCGGAGGTGCAAGTTATGCATGACATAGATGCACGTACAGAGAAGAAGATTGTGCCTCATAATTTCCTTTGTCCAATTTTGCAGGAGGTGATGAAGGATCCACATGTAGCAGACGATGGATTTTCTTATGAGTTAGAAGCGATAAAGGAATGGTTGAACAGCGGGCATGAGACATCTCCCATGACTAATTTGAAGATGAAGAACAAACACCTCACACCTAATCATACATTGCAATGTCTTATTAGGGAATGGCACCGTCATTAG

Protein

Gene

>AfisC4G01073
CGATAATGGAGAGTCAAAATGAGAAAATTTATGTATCTGTAAGCAGAAATATGGAAGGAGCCGAAAAGATCCTGAAGTGGGCATATAATCGATGGAGCAGTCAATCGGTCTCCTTTGTCATCCTTCATATAAACACTAATACCTTGGATTATGTACAAACTCCTTGTAAGTTGCAGCTGCATAATCTTTAACCATTTTTTCATGAAATCTAAACGTTAATGTTAACATGCAAACCCTCTAAAGGAAATATATATACATGTGTGACTACTAGCTACTAAATTTAGTTGAATTCTTAGTTGGAAAGTTTCCATCTAGTTCGCTAAATGATGTGATGTTGGAAGACTACAAGGCTAAAGAAAACGAGGAAGTGGACAACCTCCTGCGCAAATATACATCTTTAAACTCCCAGGTATGTATTTACTTATAATAACTGGGTATTTTTTTTCATTAGATTGATTTAAGGGATTTTTCAATTTGCAGGTGAGAGTAGAATTATTAAAAGTTGATGCATCTGATGGCTGTGTCCCTAAAATTATTGTTAGCTTAATCGAAAGTCTTGGAATCAAGAAGTTGGTTATGGAATTCAAAAACACGAAATCAGCATCCTGGTAATTATATAATATACCTAATTTTCTAGCCCTATTCCTTTTTCATGTAACAATTTGATATATAATGAACATGTAGGAAGGGAAGATATAAGAATATTAACTCTTGCTATGTACAAAAGCACAAGCCAAACTTTTGCGAACTATTTATTGTATGCGGTGGACAACTAGTTTTATTCAAAGAAGATAATCTCGATGAAGGCTTTTCCTTCGTCCAAGAAAATGGAGCCATAGTTGCAAATTTTAGGAAGAAATCTAAAGAAAAAGGAAGTTTCAAAACGTGGTGGAGTAGAAAACCTGTGGATACTTCGAGAAATGACGTTTCTTTGGCATTATGTGTTGATAACGATAATGTGGATGTAGTAAGTTATAAATGGGAAGACTGTGAAGAAGAGATTGAGATATACGTACGAAGTTTAGAAGAGTTGGAGTTAGGCGATGATACTATAAATAATCAACATTTGCACTCCGCTAAACAGCAGGGCTTGAACAAAGAGGAGATATTGCAAATAATTCAACAAACTAAGTTAAACGTAGAAGTTGACGAAGAAAGAAGAAGAAAAGCCGAACGAGTCATATATTTGTGCAATCAAAGGGTTGAGCAAATAGAAGAAAATTCTAGAGAAGAAATGGCAATGCATGCAAACTTTAATGAAGAGCTAAACAGTACTAAAAACCAGATACATATAACATCAAATAACATCACAAAAAGCAAACTCAGTATAGAATCACAGCATAAACAAGATGAAGAACTTGGATTCAAGCTCCATTGTTATTCATTGCAAAATTTGGTGTTGTCTTCTGAATTTCAAATGTTAGAAAATGAAAAGGTTGGCATGTTCCAGAAAATAAGGGAAACCCGTAAACAAATAGATTCGATGAAGCGGAGAATTGAATTCTACGAAGAAATAAAAGCGATTGATGCATTGAATGGACTTAATTATACATACAAAGAATTTACGGCAGAAGAATTGAGAACTGCAACCAACAATTTTTCAGAGGATAATATGATTTCGTCAATAGTTTACAAAGGAAAGATGGAAAATACAACCGTTGCAGTTCATTTCAAGCCTTCATTGTGTGATTCAGTAGAGAAATTCAAAGCTCAGGTAAGAAAAACAATCGGTCTAGTCTCTTTCTTATAAAAACATGATATGTGTATATATCATATGCAGGTCGAACTGTTGAGCCAAGTTAACCATCCAAATATACACATTATGTACGGTGCATGTACAAAACTCAAGTGCACTGTACTGGAACACATGGAAAATGGAAATCTTCATTCGATTCTCTTCTCTTCGTCTTCAAATAAGCAGATTATCCTTCCATGGAACACGCGTATCAAAATTGCAGCCGATCTTTTATCTGCCATAGGATTTGTTCGTGGCTCACCTATGCAGCATGTACACATCATGCACAACCATCTAAATGCTTCCGATGTGTTCATAGACAGCAAATTCACCGCAAAAATCAGAGTGCTTTGCTATGACATTGCTTCACTAGGACTGATAATTCTTCAGCTAATAACTGGAAATGAAGGAGTCGGAATGGAAGAAGTTAAAGCAGCCATCGAGGAAGGGAGAATAGTGCACATTTTAGATGGGAAGGCAGGAGAGTGGCCTATTGCTTTCGCCAGGTCATTTGCAAAAATTGGAGTCAAGTGCTGTGAACATAAAGAGGAAGTAAATTTTGTGAAGGAGACGGCAAAGGAGATTGATGAATTAAGAGAGAAGGCGGAGGTGCAAGTTATGCATGACATAGATGCACGTACAGAGAAGAAGATTGTGCCTCATAATTTCCTTTGTCCAATTTTGCAGGTGATCTGTCTTCGAACTCATATCAATACGTCTTTGAACTTCTATTAAATGTGTGGGATAAACCATATACGAACATTGTTGTAAATCAGGAGGTGATGAAGGATCCACATGTAGCAGACGATGGATTTTCTTATGAGTTAGAAGCGATAAAGGAATGGTTGAACAGCGGGCATGAGACATCTCCCATGACTAATTTGAAGATGAAGAACAAACACCTCACACCTAATCATACATTGCAATGTCTTATTAGGGAATGGCACCGTCATTAGACAAACGAATTTCCACTGCTATTTTCCTTTAATAACATTTTCGGCTGTTCTCTACTCTTGGCAGTGTTGACGTACTCGAACCATAGCACCGGTGAACTGTATACGCTTAGTAGAATTATTCAAAATTAAGACGAATCAAACAGTACTTTAATACTCGATAGCAACATGTAAAATATGTAACTGCACAAGGAAAGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250131.1	1.4e-167	putative U-box domain-containing protein 50
Swissprot	Q9FGD7.1	4.4e-89	RING-type E3 ubiquitin transferase PUB50
trEMBL	A0A6J0PEC9	4.8e-133	putative U-box domain-containing protein 50 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G65500.1	32.38	9e-104	375		U-box domain-containing protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G01073	AT5G65500.1	800	457	19	3	752	17	782	32.38	9e-104	375
AfisC4G01073	AT3G49060.1	413	215	13	391	752	404	802	32.20	3e-51	200
AfisC4G01073	AT3G49060.1	174	124	3	5	177	14	180	24.14	2e-08	58.2

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	454	580	37.9	1.1e-09
PF04564.12	U-box	Domain	685	752	55.4	4.6e-15

Gene Ontology

Accession	Ontology	Name
GO:0004842	F	ubiquitin-protein transferase activity
GO:0016567	P	protein ubiquitination
GO:0005634	C	nucleus
GO:0016874	F	ligase activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network