result

Gene information

Detail information of AfisC4G01489

Location

Gene	Chr	Start	End	Strand
AfisC4G01489	chr4	274684011	274685371	+

Sequences

CDS

>AfisC4G01489
ATGACAGCCAATGGCCTATTTGATTTTGATTATGTGTCTAATGAAAATGAAGCTTACTTCGCATATTCACTAAACCCCAATGATCCAGTAATATTAAGTTGGATAATTGATATATCAGGTCAAATAAGGCAATTGATTTGGATAGAAGATATTGCAGCATGGAATCTGTATTGGTCACGTCCTATAAAACAACTTGACGTTCATGCTTTTTGTGGACCTTTTGGTAGCGGTAATGACAATGCTATACCATTCTGCAACTGTATAATTGGATTTGAACCAAAATCGCTTAGTGAATGGCTTGAGAGTGATTACACACAAGGCTATAAGAGAAAGAGTCAGTTGCAATGTGGTTTTAATAGAAGCCATTTAGAAGTAGACAGGTATCTTCCCATGGATGACATTAGGTTACCTGATAACCAACTAAGGTTAAACGTTGATGATATTTCAGATTGCAAGAACTATTGTTTGAGCAATTGCTCGTGCAGTGCTTACTACATAGCTGATAATTCAAACTGCTCTTTTTGGGTCGGAGACTTGCTTAATCTTGAAGATCAATATGCATCTGACATGTCGGGCAGTGGAAATTTCTTCCTCCGTCTTGCAGCATCAGAACTTCCTGATCCTAAGACAAAAAATTCTAGGAAAGCAACAGTCATAATCATGGTGAGCATTGCTGGTGGAGTGCTGCTATTAGCCTGTGTAGTTTGTTTTTTATGGAAAATGAAGAAAATAATTAGAAGAATAAAAATAAGAATTACCTTAGAAGCAACTTCTGGGTCCAATGAACATTCAACTAATGGACAAAGGGAAGACAATATCGAACTTGCTTTGTTTGAAGTTAGCACCATTGTTACCGCTACAAATTACTTCTCTGCAGCTAACAAGCTTGGAGTAGGTGGATTTGGACCAGTGTACAAGGGAATTCTTGGACCCGATCAAGAGATAGCTGTGAAAAGACTCTCCAAAGCATCCATGCAAGGAGTGGAGGAGTTCAAAAATGAGGTTACGCTTATTGCTAAACTTCAGCATAGAAATCTTGTTCGGCTTCATGGTTGCTGCATTCACAGAGAAGAGAGGATGTTAATATATGAGTACATGCCAAACTTGCCTGTATGA

Protein

Gene

>AfisC4G01489
ATGACAGCCAATGGCCTATTTGATTTTGATTATGTGTCTAATGAAAATGAAGCTTACTTCGCATATTCACTAAACCCCAATGATCCAGTAATATTAAGTTGGATAATTGATATATCAGGTCAAATAAGGCAATTGATTTGGATAGAAGATATTGCAGCATGGAATCTGTATTGGTCACGTCCTATAAAACAACTTGACGTTCATGCTTTTTGTGGACCTTTTGGTAGCGGTAATGACAATGCTATACCATTCTGCAACTGTATAATTGGATTTGAACCAAAATCGCTTAGTGAATGGCTTGAGAGTGATTACACACAAGGCTATAAGAGAAAGAGTCAGTTGCAATGTGGTTTTAATAGAAGCCATTTAGAAGTAGACAGGTATCTTCCCATGGATGACATTAGGTTACCTGATAACCAACTAAGGTTAAACGTTGATGATATTTCAGATTGCAAGAACTATTGTTTGAGCAATTGCTCGTGCAGTGCTTACTACATAGCTGATAATTCAAACTGCTCTTTTTGGGTCGGAGACTTGCTTAATCTTGAAGATCAATATGCATCTGACATGTCGGGCAGTGGAAATTTCTTCCTCCGTCTTGCAGCATCAGAACTTCCTGATCCTAAGACAAAAAATTGTATTTTCATATTACCTATAATAAAATGTTTTGGGTACCATAGTTTATGACATTGATACTCGGCTAACACAACTGCAACTCGCAGCTAGGAAAGCAACAGTCATAATCATGGTGAGCATTGCTGGTGGAGTGCTGCTATTAGCCTGTGTAGTTTGTTTTTTATGGAAAATGAAGAAAATAATTAGAAGAATAAAAATAAGAAGTATGTACATCCTTGTGATATTTTCATGATTGAATTCAATGTAATATGAATAGACTCGTACATAATATATGATAATAACTATTACATTGCCAATGCAGTTACCTTAGAAGCAACTTCTGGGTCCAATGAACATTCAACTAATGGACAAAGGGAAGACAATATCGAACTTGCTTTGTTTGAAGTTAGCACCATTGTTACCGCTACAAATTACTTCTCTGCAGCTAACAAGCTTGGAGTAGGTGGATTTGGACCAGTGTACAAGGTAAATATTGATTTTGATATGCTTCTAAATATTGCTGGAAAATGTGAAATCTTGTTCTTTAGGGAATTCTTGGACCCGATCAAGAGATAGCTGTGAAAAGACTCTCCAAAGCATCCATGCAAGGAGTGGAGGAGTTCAAAAATGAGGTTACGCTTATTGCTAAACTTCAGCATAGAAATCTTGTTCGGCTTCATGGTTGCTGCATTCACAGAGAAGAGAGGATGTTAATATATGAGTACATGCCAAACTTGCCTGTATGA

Functional annotation

Database	accession number	e-value	annotation
nr	TQD76391.1	1.1e-85	hypothetical protein C1H46_038065
Swissprot	O81832.4	6.6e-62	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
trEMBL	A0A540KQ96	8.3e-86	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G21380.1	37.43	4e-64	242	ARK3;RK3	receptor kinase 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G01489	AT4G21380.1	382	205	10	9	371	241	607	37.43	4e-64	242
AfisC4G01489	AT4G21390.1	394	199	11	1	368	233	607	38.07	6e-64	241
AfisC4G01489	AT4G27290.1	374	178	6	1	368	228	543	35.29	2e-62	236

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00954.17	S_locus_glycop	Domain	6	95	64.5	1.1e-17
PF08276.8	PAN_2	Domain	125	181	50.8	1.2e-13
PF07714.14	Pkinase_Tyr	Domain	293	368	51.7	6.5e-14

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005773	C	vacuole
GO:0004674	F	protein serine/threonine kinase activity
GO:0006468	P	protein phosphorylation
GO:0009506	C	plasmodesma
GO:0051707	P	response to other organism
GO:0009875	P	pollen-pistil interaction
GO:0031625	F	ubiquitin protein ligase binding
GO:0045087	P	innate immune response
GO:0050789	P	regulation of biological process
GO:0071215	P	cellular response to abscisic acid stimulus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network