Gene information

Detail information of AfisC4G01850

Location

Gene	Chr	Start	End	Strand
AfisC4G01850	chr4	352483319	352484193	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	TEY47146.1	7.9e-38	EREBP-like factor
Swissprot	A0A1X9PY88.1	1.9e-20	Protein ERF REQUIRED FOR NODULATION 1
trEMBL	A0A8X8YSZ3	4.2e-33	Uncharacterized protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G19790.1	53.54	3e-23	104	RAP2.11	related to AP2 11

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G01850	AT5G19790.1	99	43	1	1	99	1	96	53.54	3e-23	104
AfisC4G01850	AT4G27950.1	85	36	1	7	86	98	182	51.76	3e-18	88.6
AfisC4G01850	AT4G23750.2	80	31	2	5	84	107	182	56.25	4e-18	87.8

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	21	70	49.7	2.9e-13

Gene Ontology

Accession	Ontology	Name
GO:0000302	P	response to reactive oxygen species
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0051726	P	regulation of cell cycle
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006970	P	response to osmotic stress
GO:0009880	P	embryonic pattern specification
GO:0042802	F	identical protein binding
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009733	P	response to auxin
GO:0009739	P	response to gibberellin
GO:0010030	P	positive regulation of seed germination
GO:0010104	P	regulation of ethylene-activated signaling pathway
GO:0035865	P	cellular response to potassium ion
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0048528	P	post-embryonic root development
GO:0048825	P	cotyledon development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network