result

Gene information

Detail information of AfisC4G02145

Location

Gene	Chr	Start	End	Strand
AfisC4G02145	chr4	400306696	400309261	-

Sequences

CDS

Protein

Gene

>AfisC4G02145
CTTCTCTCTCCATCACAAACCCTAGACAAACAGCTCTCCACCGTAAGTCCTTTTCTTTTCTTTTATATTTAACTCCTTTGTTTATTCACTTATTTTCAAATATGTATATTGGCTCGAAAGTATTTCAGTTCCATTTATTTCGCAGTTTCCCCAATAGTTTTCTATTTTTTTAAGATCCCACTTCTGAAATCTACGATTGTGCATTCTTTTCTTTAAATTGAGTAATGTGGAAAATAGAACGTTTGCATGAGCTATACTTTGCCCCAATTCGGAATTATGGCTCAGTTTTGATTAGATTTTTTGTTAGCGTTTTTGTTATAATGGTATAATTCGAATAATGGTTTTGTTTTGGATATGGGAAAAGTAAAATCTGCAGGAAAGAATTGATTTTTTTGCAGTTTAAACCCAAAACGGAGGAGCTTGCAATTTATTACTGTTTTGTTTATGTTTCATGGAGTGGAAATGTTGATTGCTTTGCTGTGGGAGTAAGATGATCTTAATTTGTTCGGAAATGAAGGATAATTACATTTTTGATGTACTTTTAGATTCAACTGCAATGCAATATGCAGCATTTTAACCGGTTTTAATTATAAGTTGCTCTTCCTTTGAACCCTTTGGAAAATTTGGGGACTGCTTGCCGTAATGAAGGTGAAAATATTCCGTGGAAGTGGAACAGAACCATAGAAGCTTTTACATATAATGCGCATTTAAAGTGAAATCGTAAACTAGCCTATACAAAATTCTATTCAAGTGTATTTACCATGATAATATATGCTGTTAAAAGAACAACTTTTGAATTAGTTTCCAACTAAAGTGATTTAGTAGAATGACAAATTAGGATGAAAATTTAACTATTGTATATAAATGTCAATTATCATCACTGTCATATTAGCTAAAAGGGCAGGTTTAAGGTTTGTTTTGCTTCTATTGTGAGTCGATAACCATCAAAGATACAATGGATACTTTGCAAATGAAAACGAGCATGCGTATTTGTGTGCACTGGTTGAAACAGGCTTTATTATATCCATTTACCATTTATGCTCCATTATTTTTCCGCAACATTTTTTACGCAACATTTTTCTACTTCGACCATCTATGAAAATGTGGTGATATGATTCTAGTTATCGTCTTATTATCGACAACTCATCTATGAAAATGTGGTTGCTGTCCTATTTGAATGAAGAAACTCTGCTGGTTTTGACAGAACTAACTGCAATTTCACCCTACTCGATCTGCCATCATTCATGTTCTCTAATACATCCCCAGTCTCTTAATATGAGATTTTGGCCAAAACGCAACCTTTCTCAGGTTATGTCTCGTGTTCTTGGGTTTATCCTTGCCCGATTTAAAATAACTCTATTAGGCTTGATTAAACAGAACTAGAATTCCATCTTCTTCTTCTTCTTCCTCCTTTTCTTTTTTTATTTATTTCTATTTTATTTTTATATTTTGACCATATAAAAACTTCATACCGACTATATTCTCTGTAAACTAAATGTCAGTTTCTAAAGACGTGTAAGCTATGGATGACGATGGAGGCCTGAACATGCACGACTGGAGCTTTTACCATCAGTCTACAAAGGGCAGTCTAGGCCTACAACTTATGCCCAATTCTACATCCAGTTGTGATGCCAGATCACTTTTCTCAAACAGTACTGCTTGCTTCAACAACCACCTTCTTCACCACACTCATCACCCAAATCACAACATTTTTCACTCGAGTCACCATATTCCAGAACCTTCTTCAAGCAGCTGGATCCTTCACAATAGACTCAACAACAGTGAAAGTAGTAATAACGTTCATCACTTCATTCCTCTCCAGACAAATTACAGTATCATTCCAAACCCCCTTCAAATGATACACCCTCCCATTCTTAATCCTTCACCTAAAGAGGATGTCCAATCTGCACCAGTGGATCATGATTCTTGCACTCCTTATGAACCTCATGCTAAGAAGAGATCTCAAGGCCGCCCCTTAACAGCATCACCAAAACAAAAGAAGCCTAAATTGAACATCGATGATTCCAATAATAAAGTGAGCAAGAACTGTACCGATATGGTTATTAATGGCGTAGGCTTTGACTTATCAAGAATTCCACCACCTGTATGTGATTGCACTGGAAGCGCACAGCAGTGTTATAGGTGGGGAGTTGGAGGTTGGCAATCTGCTTGTTGTACTACTAACATTTCAATGTATCCCCTTCCTATGAGTCAGAAAAAGAAAGGCACGCGTATTGCAGGACGCAAAATGAGTCAAGGAGCTTTCAAAAAGGTTCTGGAAAAGCTTGTGGGCGAGGGCTATAATATTTCGAACCCGATCAATCTGAAGAATTTCTGGGCAAAGCATGGGACAAACAAGTTTAAGACTATCAGGTAATTGATTTGAAGGCACTTGGGGTATGTTTTCCTTGTGTATATTGATGCTGCTGAATTAGGTCGTATTCACTCTTTTGTATTGTAGTTCGGATGTTTTTGTAAGGCTTAGATGATTGTCTCATCTTCACTTTTAATGTAATTTAGTTGGAGAACTAATTTTTCTATCAATGGATAAAATTTTTCTTCTTTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020275328.1	4.5e-66	protein Barley B recombinant-like
Swissprot	Q9SKD0.1	5.4e-48	Protein BASIC PENTACYSTEINE1
trEMBL	A0A5P1EMS0	3.3e-66	GAGA-binding transcriptional activator

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G01930.1	42.90	1e-55	213	ATBPC1;BBR;BPC1	basic pentacysteine1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G02145	AT2G01930.2	310	124	9	1	284	1	283	42.90	1e-55	213
AfisC4G02145	AT2G01930.1	310	124	9	1	284	1	283	42.90	1e-55	213
AfisC4G02145	AT1G68120.1	111	33	0	174	284	160	270	70.27	1e-45	180

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06217.9	GAGA_bind	Domain	1	284	280.2	3.5e-83

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005737	C	cytoplasm
GO:0005730	C	nucleolus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009723	P	response to ethylene
GO:0042803	F	protein homodimerization activity
GO:0043565	F	sequence-specific DNA binding
GO:0050793	P	regulation of developmental process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network