result

Gene information

Detail information of AfisC4G02342

Location

Gene	Chr	Start	End	Strand
AfisC4G02342	chr4	443256482	443260306	+

Sequences

CDS

Protein

Gene

>AfisC4G02342
AGATAAATCTAATATTGAATAATAATAAAATGATTTTTATATTTCGACTGTAGCTTTTCTTTGCATCTCTTTATATATAAGAGAGATTGAAGTTTAAGGTCTCCACACAATAATCTCTCAACTTCCATACAACACAAATTATATTTCTTTTCGTGAAGTGGTGGTTGTGAAGGAAAACTGACATAAATGAGGTATTCTTTAAAATTGACCTTTGGCTTTCTATTTTTCACTGAAATATATATGGTTCGTAGTATCTTCTGTAAGTAACATATAGCACTATATAGTATCAGTTGTATAAACATGGTATTGATTGCCAATTATTTGCAGATACATGTATTAACTATGAACTGGAGATGTACATAGCTTGACGTTCTGGACATAGATATTTTTGTCGAGGAAGAGAATAAGATAAAAGTAATTGGAAGAAAAATGCCAGTACCTCTTGCACCTTACCCAACTCCTGCTCCTGTTTTACATCCTAATGGTAATTCCTTATTTTTCCTTGCTTATGAACATCACAATAGTGTATAGTTCATAGATATGAAAAAGAAAACTAGGCATTCTTTCGCTAGTCTGCAAAAAAACAACTATGTATTTAAAAAAAGAACTTAACCATGTAGGCTGTAAATACCATAATGTACATAGTGATTTTCATCAAACAGATTTATAGAGCTATGTGTTTCGTTTCGTTTCATGATATGCATTTTTCAAAAATAATGTAGGTGCACAAAGTCAGCTTGTGTGTTCGGGTTGTAGAAATTTGCTTGTGTATCCTCAAGGTGCATCATCAGTTTGTTGCGCTGTTTGCAATGTAGTCACATCAGTGCCTCCACCTGGTAATTCATGTGTTTCTAATACTTGCCACGAAGTGGTTATTTTTAATTCTTTGAGACTGAAAGCTATACTATTTGTGTTATAATAGAAAATTTAGATTTACAACACAAATAATTCACCATTTCATTATCTATATCTGCGAATAAAGACAACACGAGACATGAATTGGTAAAGATTTTTCAAAGGTCCCTACATACCAAACTTGTTATCTGGAAGATAATCAACTGATGTGTCTACCCAAGATATCCGTGTAACTTAATCACCTAACTTGGTAACCGCTAGCCTACAAATTTATAATATGCAGACATATTTATTAATAATTGGAATAGAAGCGTAATGCTTTAATAAGTTTCGAAATTACCCCTATATGCAAATAAAAGGTCAAGAGTTCGAAATTCACAAAAAACGAATATTAACGTCTATTTTTAAATGAAAATTCTGAAATGTAACTAAGGTTACAAGTTTAAAATTTTGTTATGACGAACAAATTATAATAATTCTTTTATGTTTTTCAATTAATTTATTTTGTTTTTCAATTTATTTTTATCAAAACTAAACAAAAATTTATATTTTATAATTTTATAAAAAAAATTACATGCACGTACGTTCACGTTTCATAAAATCTCGTGTGTAGAAAGGTTGAAGGACACCCTTTTTTGTAGCATATTTTTAGCACCTCTATCATATTTTGAGTTACATAATACTAAGTAATATGAACTTTTGTGAACATGCTCGTATTATACACGAGATAACTTCCACAAAATTTGAGTGTAGTTAACTATGCATAACAAGATAAATTTGATGTTTCAAATAAATGGATAAAATAAATATTTTAATGATTAATATTGACTTATTATTTCGGCTACGTTAGAAATTTCAAAACAATCTCATATGTTATAGCAAATTTGGTGATAATATTCATAATGTAAATTAAACATTCACAAAAGTTCATATTATTTAATAGGAAATTTTTTTAAATTTGGGCCGGTTTTAAACTTATTTATGCAATTATGTCACTTTACAAACTTACTACAAAATTAACCCATTTTTGAATAGCTCAGCGCCACACTGACCAAAAGTGTACCGGTGTCATTTCAAATGATGCTCGTATTTTTCTTCTTAAATTTACATTGGCTCATTTTGAAAAGAAGTCAATGTAAAATAAAAAAAAATACTGACAGATAAGAAGCCAATGTAAAATTTAAAAATAAAATGTAATGGCGTCATTTGAAATGACGTCAGTACACTTTTGACCAACGTGATGCTAAACTGGTCAAAAGTAGGCTATAGGTGTAATAAGTTTGAAAACAAAGCTATAACTGTAATAAGTTTGAAAAATGGGGCTAAAGTGAAAAAACAATCCTATTTAAAAAATTATAGATGTGGTAAAAGGGTGGCTCAAAGTTTACACATGTACACATATAGAGAGAAGAATCAGTAGCACCCTAAATTCAACCTTCAACAAAGATTTATGGTTTTAAATGCTAATTTTTTCTTTTTCTTGTCATACCATTTAATTATCTAATCAGAAACTAGTGGCTGAAATTAAGGGGCCATTGGTGAAGGTTGAATTTAGGGGGTTGCTAATCCTTCCCCTGCATAGACATATAGACAGGCATTTTGAGATTAAATTAGCGATTTCATTTTGAAATGTGCAGCCTTGAAGGCTTGATGTGATAAGCATGTGGTCAATAGAGTATGTACTGAAATAGTTTCTAACTTTGGTATCAAATATCTTATAGTTATTTGTGTTGTTCCTTGTAATATTTTCAAGTCTATTGTCCACTTCATCATAAATCATACATTATTGCAATTAAATTATTTTCACACGTATATATTTGTATTGCATGATTTGAACTTTCCCTCTTTTAACTAAAAGACATGTTTGTCTGTTGATGTGTCAATATCCTTCCACATTACATGAATATAGGAACTGAAATGGCTCAGTTGGTTTGCGGAGGCTGCCACACGCTCTTAATGTACATACGTGGAGCAACAAGCGTTCAATGCTCATGTTGCCACACTGTTAATCTTGCTTTAGAAGGTATAGTATTAATTTGGATCTATCTATTTAGTACCGTGTAATTCTGACAAAATGCATCAGTCCATAATTTCACAAGGCATACAAGCTAAACCAGATACGAAGTTTAATCAACTTTCCCTAATTTTTCCAAGTACAATCGGTACCTGTAATTTTGATCTATTTATTTTATACTTGTCTAAATTTGTTATAAGCTATCAAAATGGATAAATAATTACCCTTTTAGATAATATTATATGTGTTGTTGTAGCTGAAACATAAATAAAGGATAATTATGAACAGGAACATGCATCAATACATATTGATTAATGTAAGTTTACAAACATTGTAGCGAACCAAGTAGCGCATGTGAACTGTGGAAACTGTCATATGTTGCTGAGGTATCAATATGGAGCAAGATCAGTAAAATGTGCGGTTTGCAGTTTTGTTACTTCTGTTGGGGTTAGTTTAATTTTAGTTCAAATTCTTACTTATGATCTCTTATAGTTTGAAAGTCATAATTATACTCTCAAATGTGTTTATAGATTGTCTTGAATACGGATCAAAAGCAGAGTGTCTGATTAAAGAAAGCAGGAAATGGAAATTGGTTGCTAAAATAATAATGATCCGAGTAGAAAGGATGACATCCAGCATATTTACCTGCTCAAGTGTGCAATCACTGCAATGTATAGAACTGTTCTGACTGTGCAGTAATGTATAAGTAAATTTTAAATTATCTTACTATAGACTAGTATTCTCTTTTGATGTTTTTAATGCGTATGTTTTACATTTTGGAGGAGTAAGTTGTAGTTTAATACAAGTATGAACCTGTACAACTTGCACAGATGTTGCGTTTTTTTTTTTTATATAGAAAGAACAAATATGCTTAGTTTAAAGACAACGTTATATATTTTCGTGTGCGCAGCTGGTAAGATCATTAATGTAATGAAGTTGTTAATGGACTGGTAAAT

Functional annotation

Database	accession number	e-value	annotation
nr	KAB8089424.1	6.3e-16	hypothetical protein EE612_014321
Swissprot	Q0J7V9.1	8.5e-18	Putative zinc finger LSD1
trEMBL	C7IYF9	4.5e-16	Os02g0807700 protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G32540.2	81.20	2e-55	211	LOL1	lsd one like 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G02342	AT1G32540.3	133	24	1	8	140	20	151	81.20	2e-55	211
AfisC4G02342	AT1G32540.2	133	24	1	8	140	20	151	81.20	2e-55	211
AfisC4G02342	AT1G32540.1	112	9	0	20	131	64	175	91.96	2e-55	210

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06943.9	zf-LSD1	Domain	26	50	40.7	1.4e-10
PF06943.9	zf-LSD1	Domain	65	89	47.2	1.3e-12
PF06943.9	zf-LSD1	Domain	103	127	39.5	3.3e-10

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001666	P	response to hypoxia
GO:0002240	P	response to molecule of oomycetes origin
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005576	C	extracellular region
GO:0005634	C	nucleus
GO:0055114	P	oxidation-reduction process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008131	F	primary amine oxidase activity
GO:0009536	C	plastid
GO:0009862	P	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104	P	regulation of ethylene-activated signaling pathway
GO:0010310	P	regulation of hydrogen peroxide metabolic process
GO:0010602	P	regulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618	P	aerenchyma formation
GO:0016575	P	histone deacetylation
GO:0034051	P	negative regulation of plant-type hypersensitive response
GO:0034052	P	positive regulation of plant-type hypersensitive response
GO:0045595	P	regulation of cell differentiation
GO:0048364	P	root development
GO:0051568	P	histone H3-K4 methylation
GO:2000121	P	regulation of removal of superoxide radicals

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network