result

Gene information

Detail information of AfisC4G03558

Location

Gene	Chr	Start	End	Strand
AfisC4G03558	chr4	675698655	675699794	+

Sequences

CDS

Protein

Gene

>AfisC4G03558
TTCTAACAAAAATTGGTTAAAAAACATTGGAAATTCAGTCATACTTAAAGGGCCCATTAAAAGTATCATGTATATATATTACCCCCTCCAAACATTCTCAAACTCAAAAATACATTCTCTATCCTAACTTCATTTCAAATGGAACTCCACTTCTCAAAACAACAAACACCAAGCTCTAAGCGCACCAACTTCAAAGCAAGAAACAACAACAAATTCATTGGAGTTCGACAGAGGCCTTCCGGAAGATGGGTGGCCGAGATCAAAGACACAACTCAAAAAATTCGAATGTGGCTTGGCACATTTGAAACTGCTGAGGAAGCAGCCCATGCTTATGATGAGGCCGCGTGCTTGCTTCGTGGATCAAACACGCGTACAAACTTCACGACGGTTGTATCATCTGATTCTCCTGTGTCTTCAAGGATACGTAAAATGCTTAATCAAAAGATGCATAGTAAAAAATCTTTGGTTAAAAGTACTAAGAGTGCTAGGATTTATTCGAACGTTGCACCTACGATCTCCACTAGTACTTTCTTGAGCACTAGTGAGACATTTCTAGAAAATAGGGATCCTGAGAAGAATGATGAAGAAATCTATCGTCCATGTATTATGAATGGAAGTGATGAGTATGAGCTATGTGGGTCTAGTTCTTGGGTATATGATTCTGGGTTTGAGCTTCCTTCTTTTGATGAGTTGGATACATGTAAGAGGAATTTTTTTGAGGAGGGTACTGTGATATCGAGTGAGTTGGACAGAATGAAAGTTGAAAGGCAGATTTCTGCATCATTATATGCGATGAATGGAGTTCAAGAATATTTGGATGCCGTTAATGTCACTTCTGATTCATTTTGGGATCTTCCTCCGCTGTATAAATTGTGCTGGAGTTGAAAATCTAGCTACTAGTCGTCTTTCTTTCTACTTTAGTTATAATTATGATGAAGTTATGGTTTATAGAAGTTCAGTTATAAATTGGTTTTCAGAACTCAGCTTCATTCATTATAATTCAAGTTTCAGTGAATCTTGAAGAGTTGACTTGCTTGTTTCATATATGTTTGGAGTGTTTATGAAATAGATTTGTGCATCTATTACATAAAAATGTATATGTATAATTTTCCTACACAATGATGAATTGTTACATTATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008804361.1	5.2e-58	ethylene-responsive transcription factor ERN1-like
Swissprot	A2Q5W1.1	2.0e-51	Protein ERF REQUIRED FOR NODULATION 1
trEMBL	A0A8B7CQP6	3.7e-58	ethylene-responsive transcription factor ERN1-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G19790.1	43.20	4e-40	161	RAP2.11	related to AP2 11

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G03558	AT5G19790.1	250	126	6	8	245	4	249	43.20	4e-40	161
AfisC4G03558	AT5G13910.1	76	30	1	25	100	19	91	56.58	1e-17	86.7
AfisC4G03558	AT4G27950.1	70	32	0	14	83	106	175	54.29	1e-17	86.7

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	25	74	46.9	2.2e-12

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0005634	C	nucleus
GO:0042802	F	identical protein binding
GO:0009414	P	response to water deprivation
GO:0009536	C	plastid
GO:0009739	P	response to gibberellin
GO:0010030	P	positive regulation of seed germination
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010143	P	cutin biosynthetic process
GO:0010166	P	wax metabolic process
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0048528	P	post-embryonic root development
GO:0048825	P	cotyledon development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network