result

Gene information

Detail information of AfisC4G04118

Location

Gene	Chr	Start	End	Strand
AfisC4G04118	chr4	777750495	777751837	-

Sequences

CDS

Protein

Gene

>AfisC4G04118
ATGGAAGATGAAAATACCAACAGCAGCAATGCTCAAAGGAGAAGCAAAAGGCCATGGACGCCAGAAGAGGATGAGCTTCTAAAGAGGCTGGCCGAAGAGATCCAAGGACAGAAGAAGTGGGTAGTGATCAGCGCAGCGATAGCAGGCAGGTCGCGGTACTCGTGCTGCCGTGCAGGGCGCGGTGGTGCTATCACCTGGACGCGGACGTGAAGCGTAGGCCGTTCACGCTGGAGGAGGATAAGGCGATAATGGAGGCGCAAAAGTGGCACGGGGATAAGTGGGCGACGATAGCAAGGATGTTGAATGGGAGGACGGGTAAAGCGGTGAGGAACCACCGGTACTCGACGCTGTGGAGGAATAGGAGAGAGTCGGAGGAGTGTTATACGTCTAGTATATCAAAACAGAGAATAATCAATGGAAATGCATGATCTACCTCCTCACAACGAAGCATACATTTGGAAACCCCAGGCcCCCAACCTCCTCATAAGAGAGTCATATATAAACTAATATAGCTCTTAATATTTTGGCGATGTGAGACTTTGTATATTTTCATTCATCTTATTTTTTAAGGAATTCCAACAATGAGTTGGATCAGGGGAGGAAGGAAGTGGAGGGGGAGCGGATGAGGGCTTGCTCGGAGCCGACAACGGTGCTGACACTGAGTCCGCCTGGGGAGGCGCCTGGGTTGAACCGCAAGAGTGCTTAGGTAATTATGTTCTAAAGGACTTTTTGCTCTAGGGTTTCTTTCTCTTCTTTCCTTTTTCTAATATACATGTATATAAGTGTGAAAGAAATGCTGTTTCTATTTTATTTTCTAGATTTTTTTTTCTTTTGTTGTTTTCATTCCAGATAAATTATTTCACCTATTGATAGCGTTCAGGTATAAATTATGTTTATGATCTAATGAGTCTGAGGCATTCATTTAGTCCGCATTGGCATCCATTTGTATTGCAAACTGAATCGTTCTTCTAAATGAAATTAAAGATTAATTTTACTCTTCAGTTACATTATATCAGACTGTTCTAAGGTAAAAGTTGTACACTTAACTAGATGTTTAGTAGTAAAATTTAGGCGAAAGAGAAAAGATCTATATGTGGTATTTATAAATCTAGGAAAGTGTTGTGTAACGACGGTCGGACCAAGCTCTCCCATCTTTAGCACGTAACGTACGCATATGGGTTGGCACACACTTTGTTGTAACAAAAGGAATCCTCAATGTTAAGTGTCTACCAACCCATATTTATACACCACTTCTTCAATTTATTTAGCGATGTGGGACTTTCCAAATCCAAACCATCATTCCTCCTTTAAACATGAGAGACAACCCTAACAGAAAGATCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_018827388.1	1.8e-21	transcription factor MYB44-like
Swissprot	Q9FDW1.1	8.9e-21	Myb-related protein R1
trEMBL	A0A8T1QE29	2.7e-22	Transcription factor MYB44-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37260.1	39.76	5e-23	104	ATMYB73;MYB73	myb domain protein 73

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G04118	AT4G37260.1	166	72	5	14	152	11	175	39.76	5e-23	104
AfisC4G04118	AT5G67300.1	103	42	2	14	110	4	105	52.43	1e-22	103
AfisC4G04118	AT3G50060.1	103	44	2	14	110	4	105	50.49	1e-21	99.8

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	63	103	41.1	1.3e-10

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0010200	P	response to chitin
GO:0046686	P	response to cadmium ion
GO:0043565	F	sequence-specific DNA binding
GO:0048527	P	lateral root development
GO:0051302	P	regulation of cell division
GO:2000022	P	regulation of jasmonic acid mediated signaling pathway
GO:2000031	P	regulation of salicylic acid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network