result

Gene information

Detail information of AfisC4G05545

Location

Gene	Chr	Start	End	Strand
AfisC4G05545	chr4	1023972059	1023974986	-

Sequences

CDS

>AfisC4G05545
ATGAAGATCTATTCTGAAAAATTACAGAAATGGCATGAATCTGGAAAAATTCATGCGCCGCCTGCAGATTTACAAATTATAACTTCCGATGGTCATAGAATTGCTGCACATTCTAGTGTTCTTGCATCTGCGTCTCCTGTTTTGGAAAACCTAGTTTTTATGCCGAGAAAAAAATGGAATTCTGAAAGAATCGTCTCGATACTTGGCGTTTGTTCTGAAGCAGTTTTCGCATTTTTGCAGTTCATCTACTCATCAAAGATTTGGTTATCTTCAATGGAAGGAAAAGAAGCGATAGAGAAGTATGGAGTGCAATTGTTACTGTTGGCGCATAAATACAAAATAGATTGGTTAAAAAAGGGTTGTGAAATTGAAATTGGGGCACAATTGAAAGCAAATTATGTAGTGGATATTTTACAAATTGCAAAGCTTTGTGGGGCATCGAGGCTATATCAAACTTGTTTGAATTTTCTATCCAAGGATTTTAGTTTAGTTGAAAAATCTGATGGGTGGAGGTTTGTTCAGAAGCATGATCCGAGATTGGAGTTTGAGATCTTACAGTTTCTTCAAGAGATGGATCAGAGAAACAAGAGATGGAAGAAAAGAAGAAAAGAACAAGAAAATTATGAACAGCTAAGCGAAGCAATGGAGTGTCTAGAACACATATGCACAGAAGGGTGCACAAGTGTTGGACCACGTGATAAACCCGCAGAAAATACAACCACTGGTCCATGCACTAAATTCAGTACATGCGACGGGTTACAAATTCTCATACGCCATTTTGCCACCTGTAACAAAAAGCCATCTAATGGTGTACCGTGTTTGCAATGCAAGAGGATGAAGCAGCTCTTTAGACTACACTCCTCGCTCTGTAGTAGGGTTGATAATTGTAAAGTGCCTCTATGCAAGCAATTCAAAATGAAGGTGCAAAGTGAAGGGAAAGGAGGTAATGTGACGTGGAACCTTTTAGTGAAGAGGGTAGGAGTGGTCAGGGTGATGAGTTCATTAGCAAGAAGGAAGAGACCAGAACGGTTGTATGATGCATACAAACACAGGACCAGGCACATCTAA

Protein

Gene

>AfisC4G05545
AATTTTTTGAGATTAACTATATTCTAAAAATGGTCCAAGAGATTAAAAAGCATATGTATAGATGTAAAAGAAAACGGTGAGTTGGTGAGGAAAAATCAATAAAAGCATCAAGAAATTTCCTCCCCATTTTGTTCCTTTACTTTCAATTCAATTTTACCATCCTGTCTTATCTGTTTCCCATTCAAATAAATGACAACGTATAATTCATTAATTAATTTTACCAAACGCATAGTTGCTGTATTGCTATATATATGTCGATGTCATCTCCTCTACTTGTGTATTTATAAATGATCCTCGCAGCGCCTTGAAAGCTAGCATATTCTCTTCCTTTTTAGCTATTCTACTGAATTTAATAGTAGTCCATTGATCAATTTATGTGAATATCTCTTACATTTGGTAAGAAGAAATGAAGATCTATTCTGAAAAATTACAGAAATGGCATGAATCTGGAAAAATTCATGCGCCGCCTGCAGATTTACAAATTATAACTTCCGATGGTCATAGAATTGCTGCACATTCTAGTGTTCTTGTAATCACCTTTTCCCCCAAATATTTCTACTTTTAAGTTTTGTATTTCGTGGAATTTTAATGAAATAAAAATCGACTTTACAGGCATCTGCGTCTCCTGTTTTGGAAAACCTAGTTTTTATGCCGAGAAAAAAATGGAATTCTGAAAGAATCGTCTCGATACTTGGCGTTTGTTCTGAAGCAGTTTTCGCATTTTTGCAGTTCATCTACTCATCAAAGTATGTAAGGTATATTATAAATACACTGCAAAGCTCGAGTTCTTGTATTTAACATTTATTTGATCTTCCAAATTGTAGGATTTGGTTATCTTCAATGGAAGGAAAAGAAGCGATAGAGAAGTATGGAGTGCAATTGTTACTGTTGGCGCATAAATACAAAATAGATTGGTTAAAAAAGGGTTGTGAAATTGAAATTGGGGCACAATTGAAAGCAAATTATGTAGTGGATATTTTACAAATTGCAAAGCTTTGTGGGGCATCGAGGCTATATCAAACTTGTTTGAATTTTCTATCCAAGGATTTTAGTTTAGTTGAAAAATCTGATGGGTGGAGGTTTGTTCAGAAGCATGATCCGAGATTGGAGTTTGAGATCTTACAGTTTCTTCAAGAGATGGATCAGGTTTGTTTTTTAATTTCTTTGCATCATATTGATAGTGATCTTAAATTGTAGTTTTATGTTACTTTTTTGATAAAATATGGATCTTGGCTCTTTATGTTATTTTCTGTAATTTAAGAATTGTGTTTAGAACGCTAAGATCCAAATTTACAGCTAAGTTTTTTTCATCAAATGGGGCCAATTCTAACAAAAGAAAAACTTTGGATTTCTGTCTTAAGAATGAATATAGAACAAGAGAGGAATTGACATGAACTTAAATGAAATGAATAGAAAGAAAAGTTGTTTGATTCTTCTTTCTTTATCACTCTGTACTTTTTTTAAAATAAAACTAAATTGTCCATATCACTCACTGGATCCTGCTTAAACTCGTAGATAAATTACTCAAAAGTATACTTAGTCAATGTTAGAAAATTTAGATCCATGAACAATTTAGTCCATTATAATAGAGAAGTGTAAATCAAGTATCTTTAAATGTATAAGATGAATGATGAAAGCTAAAAAGCTTGCATGCTGGTAGTGGTTCAGGTTCCCTAAGTCCATTATGTTATTGTAGGAATTTATATTCCAAGTTTACCAACAAAAGATAATGAAAGAGAAGAGTGCACCACTTTTGTCCGTTTTAACTGCAGTTTAACTTAGATTGAACAAAAGTACGTCCTAACCCAATGAATCAAAATTTAACTTACTAGTCGTTGTCTGTAGTTAAAGTAAATTATACTCAAAAGAGAACGTGGATTCAATTTTGAAGTTCAAATCCAGGACGGTCCAACCTAGCATATGCAAATAAACATATACATTTGTTAATAGTTCATATACGTGCAGAGAAACAAGAGATGGAAGAAAAGAAGAAAAGAACAAGAAAATTATGAACAGCTAAGCGAAGCAATGGAGTGTCTAGAACACATATGCACAGAAGGGTGCACAAGTGTTGGACCACGTGATAAACCCGCAGAAAATACAACCACTGGTCCATGCACTAAATTCAGTACATGCGACGGGTTACAAATTCTCATACGCCATTTTGCCACCTGTAACAAAAAGCCATCTAATGGTGTACCGTGTTTGCAATGCAAGAGGATGAAGCAGCTCTTTAGACTACACTCCTCGCTCTGTAGTAGGGTTGATAATTGTAAAGTGCCTCTATGCAAGTGAGTTAACTACATATTAAGCTTCTGTTGTTTTGTACATTACTTTGGTAGATAGAGTATGTACATTACTTTACATTTTTCGGTGCAAATTTGTAAGTGCAGAGTAGTAATATGAATTATTTACGTGTTTTTGGACAGGCAATTCAAAATGAAGGTGCAAAGTGAAGGGAAAGGAGGTAATGTGACGTGGAACCTTTTAGTGAAGAGGGTAGGAGTGGTCAGGGTGATGAGTTCATTAGCAAGAAGGAAGAGACCAGAACGGTTGTATGATGCATACAAACACAGGACCAGGCACATCTAAAGTCTTCATTGGGCTTGCCTTGAGTATGAATTCATCTTTAATGGGAAGACACGGGTTCCTACTATGATGATAAATCATGTTGCTGAAAACTTGAAATGTGGGAATCGGAAAAACATACTAGGGGCATTGCCTCAGAAAAAGTTGACATAATAGTAACTTAGCTTTTACCTTCATTTCATTTTTTCTTTTTACTGTTAGAATATGTATAATAACATGGTGAGCACTACATTATGATATAATCGTGTACTGTCAGTGAATATGATGCAATAAAAAAAAAACTCTGGTGAATGGTAATTCTTTACCAGCGGTTATTGTGTTAACGTACTAAGTTGAAAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246854.1	3.4e-103	LOW QUALITY PROTEIN: BTB/POZ and TAZ domain-containing protein 2-like
Swissprot	Q9FMK7.1	1.9e-66	BTB and TAZ domain protein 1
trEMBL	A0A8B7MSP5	2.3e-93	BTB/POZ and TAZ domain-containing protein 2-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G48360.1	46.08	1e-78	290	ATBT2;BT2	BTB and TAZ domain protein 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G05545	AT3G48360.1	332	162	5	19	340	31	355	46.08	1e-78	290
AfisC4G05545	AT5G63160.1	318	153	5	22	332	25	335	47.48	1e-76	283
AfisC4G05545	AT1G05690.1	332	189	7	6	336	39	354	37.95	2e-50	196

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00651.28	BTB	Domain	22	125	44.7	1.1e-11
PF02135.13	zf-TAZ	Family	212	301	44.6	1.4e-11

Gene Ontology

Accession	Ontology	Name
GO:0005516	F	calmodulin binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006508	P	proteolysis
GO:0007623	P	circadian rhythm
GO:0009409	P	response to cold
GO:0009553	P	embryo sac development
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009734	P	auxin-activated signaling pathway
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0010167	P	response to nitrate
GO:0010182	P	sugar mediated signaling pathway
GO:0042542	P	response to hydrogen peroxide
GO:0044267	P	cellular protein metabolic process
GO:0051973	P	positive regulation of telomerase activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network