result

Gene information

Detail information of AfisC4G05818

Location

Gene	Chr	Start	End	Strand
AfisC4G05818	chr4	1068257787	1068259109	+

Sequences

CDS

>AfisC4G05818
ATGCAACATAAATCAAACACTGCAGTACTAATATCAGGATGGCATAGAATGAGCTACTATTTTGCTCCTGGAAGTTTTATTTCAGTAGTGCTTAAAAGACATATTAAACTCTTACATAACGCTGTGGGTAATGCTAAAACCGATGGTAGATACATTGTCTTCGGTACTGGGGTGACTCAACTTCTCAATGGATTAATCATCTCACTTTCGCCAAATGTTACCAGTGATCCAAAAGCTCCTGTTAAAAAAGTTGTTGCTGCTGTTCCTTACTATCCAGTGTTCAGAAGACAGACCAGCTTTTTCAATTTTAAAGGGTACGAGTGGAAAGGAAATGCATCGGATTATGTGAAGACGACTTCTCCGGAGAATTTCATAGAACTGGTGACTTCACCGAATAATCCTGAGGGTCGACTTAGGCATTCAATAATCAAAGGATCTTCTGCTATCTATGATCAGGTGTACTACTGGCCACAGTATACTGCTATTAAGTATGCCTCGGATGAAAACATTATGCTGTTTTCTATGTCCAAGTTTACTGGACACTCTGGAAGTCGATTTGGGTGGGCATTGATAAAGGAGGAGAAGGTTTACAATAAAATAACAGAATATATGACACAAAACTCTGAGGGGACATCTCATGATACACAGCTTAGAACATTAAAGCTTATAAAAGAAATTTTACTACAGATAAAAACAAAGCGCGGCACTATGGGTGACATCAATGAATTTGGTTATCAAGCACTAAGAAAGAGGTGGATCGAACTAAACAAGTTAGTATCATCTTCTAACCGATTCTCCCTTCAAAAGTTAGCCCCAGAATACTGTAACTACTTCAAAAAAATTAGGGACCCCTCTCCATCTTATGGATGGTTAAAGTGCGAATGGAAAGACGACACAGACTGTGAAGCTGTACTTAGAAATGGACAGATTAAAACACAAAGTGGTGTGCTTTTTGAAGCAGATAGTCGGTACGCACGCTTGAGCCTTATTAAGACTCAAGATGATTTTGATCAGATGATACAGAAACTGCAACCTCTTGTGCATGCAAAGCAAAAGAATTGA

Protein

Gene

>AfisC4G05818
ATGCAACATAAATCAAACACTGCAGTACTAATATCAGGATGGCATAGAATGAGCTACTATTTTGCTCCTGGAAGTTTTATTTCAGTAGTGCTTAAAAGACATATTAAACTCTTACATAACGCTGTGGGTAATGCTAAAACCGATGGTAGATACATTGTCTTCGGTACTGGGGTGACTCAACTTCTCAATGGATTAATCATCTCACTTTCGCCAAATGTTACCAGTGATCCAAAAGCTCCTGTTAAAAAAGTTGTTGCTGCTGTTCCTTACTATCCAGTAAGTAGCTGCTACCTTTATTTGTTTCGTCCAATATAAGTACTTTTTATTTTGAACGATATTTGTTCTACATGGAACAGGTGTTCAGAAGACAGACCAGCTTTTTCAATTTTAAAGGGTACGAGTGGAAAGGAAATGCATCGGATTATGTGAAGACGACTTCTCCGGAGAATTTCATAGAACTGGTGACTTCACCGAATAATCCTGAGGGTCGACTTAGGCATTCAATAATCAAAGGATCTTCTGCTATCTATGATCAGGTGTACTACTGGCCACAGTATACTGCTATTAAGTATGCCTCGGATGAAAACATTATGCTGTTTTCTATGTCCAAGTTTACTGGACACTCTGGAAGTCGATTTGGGTAGGTTTATCAACTAAATATCTTCACTTCACAATATAACTCTAAATATTACTCATTCACGAAGATCGTAACAATTCTCATGATTATTTGTTAGGTGGGCATTGATAAAGGAGGAGAAGGTTTACAATAAAATAACAGAATATATGACACAAAACTCTGAGGGGACATCTCATGATACACAGCTTAGAACATTAAAGCTTATAAAAGAAATTTTACTACAGATAAAAACAAAGCGCGGCACTATGGGTGACATCAATGAATTTGGTTATCAAGCACTAAGAAAGAGGTGGATCGAACTAAACAAGTTAGTATCATCTTCTAACCGATTCTCCCTTCAAAAGTTAGCCCCAGAATACTGTAACTACTTCAAAAAAATTAGGGACCCCTCTCCATGTATGTATATATTTCTTGCTCTTATGCTTTATGTAGAGATATATTAAATTTAGGCATTAACTTGAGTTTAATTTAAATGAATGATAGCTTATGGATGGTTAAAGTGCGAATGGAAAGACGACACAGACTGTGAAGCTGTACTTAGAAATGGACAGATTAAAACACAAAGTGGTGTGCTTTTTGAAGCAGATAGTCGGTACGCACGCTTGAGCCTTATTAAGACTCAAGATGATTTTGATCAGATGATACAGAAACTGCAACCTCTTGTGCATGCAAAGCAAAAGAATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	BAD06448.1	2.3e-200	alliinase-like
Swissprot	P31756.1	2.0e-137	Cysteine sulphoxide lyase
trEMBL	Q76BK3	1.6e-200	Alliinase-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34040.1	45.76	2e-89	326		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G05818	AT1G34040.1	354	174	6	1	347	105	447	45.76	2e-89	326
AfisC4G05818	AT1G34060.1	357	191	5	1	351	106	453	42.30	1e-88	323
AfisC4G05818	AT1G23320.1	352	204	6	1	346	41	380	36.93	7e-66	247

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04864.10	Alliinase_C	Domain	1	346	558.0	7e-168

Gene Ontology

Accession	Ontology	Name
GO:0042742	P	defense response to bacterium
GO:0004021	F	L-alanine:2-oxoglutarate aminotransferase activity
GO:0005773	C	vacuole
GO:0004838	F	L-tyrosine:2-oxoglutarate aminotransferase activity
GO:0009641	P	shade avoidance
GO:0009684	P	indoleacetic acid biosynthetic process
GO:0009723	P	response to ethylene
GO:0009958	P	positive gravitropism
GO:0010078	P	maintenance of root meristem identity
GO:0010087	P	phloem or xylem histogenesis
GO:0010588	P	cotyledon vascular tissue pattern formation
GO:0030170	F	pyridoxal phosphate binding
GO:0044425	C	membrane part
GO:0047312	F	L-phenylalanine:pyruvate aminotransferase activity
GO:0047654	F	alliin lyase activity
GO:0048467	P	gynoecium development
GO:0050048	F	L-leucine:2-oxoglutarate aminotransferase activity
GO:0050362	F	L-tryptophan:2-oxoglutarate aminotransferase activity
GO:0080022	P	primary root development
GO:0080097	F	L-tryptophan:pyruvate aminotransferase activity
GO:0080098	F	L-tyrosine:pyruvate aminotransferase activity
GO:0080099	F	L-methionine:2-oxoglutarate aminotransferase activity
GO:0080100	F	L-glutamine:2-oxoglutarate aminotransferase activity
GO:0080130	F	L-phenylalanine:2-oxoglutarate aminotransferase activity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K16903	TAA1; L-tryptophan---pyruvate aminotransferase	EC:2.6.1.99	Tryptophan metabolism	ko00380

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network