result

Gene information

Detail information of AfisC4G06255

Location

Gene	Chr	Start	End	Strand
AfisC4G06255	chr4	1156756029	1156757097	-

Sequences

CDS

Protein

Gene

>AfisC4G06255
ATGGCACTTAAGGGCAGGGATTTGATTGGTATTGCTGAGACTGGTTCTGGAAAAACTTTAGCATATCTCCTTCCTGCTTTGGTGCATGTTAATGCTCAACCACGATTAGGTTTGTCTCTATAGTAATTCTTGATTCAAGCTCTTTATTTATTTAACCAAGGATAGCTTTAGACTGTGTGTCTTGAATAAGAAATATGATTGCAATCTGCTTAGTGGCTAGCTTCAAGTGTGCTTGTTTACAATATGAAATTTATGTTTATTAGGTGTTTTCATTCTATAATACAAGCATTTATAACTCCAGTAAGCGGAAGAAGTGCTTAATGTCCAATAGTTAGAAAACGGTTATAGTAATAAATGCTTAATGATTAAGCACACTTGTTTGTATGCTGATTTTGTAATGATTAATAAAAGCCAAGTGTGTGCATGCGTGGTCGAATTAAGGCTTGGGTTGAATAAACTTGGAAATTTATTTTTTGATACATACACAGCTTATGGCCGCTCTTTGTTCTGCATCATCATTTTGTTTTGTAGACGAGGCTGCTCTTTGTTCCAGATGTGATTTTAATGTTCATAGTGCGAATCTACTTTCAAGAAAACACAAGCGTTTTTCGATTATTAATCCTTCTTCTAATTGTTCTGATTCTCAATCTCCACTTTGTGACATATGCAAGGTTTCCATCTAATATGCATCTCTTTTAATTTAGTTAGAATTTGTTTTTATCATCTTTAGGCTTGTTTTTTCTTTTTCTTAAGTTTGATTTTCTTTACCTTTCTATCAAACAAATAAATCTTTGGGTGCTATCTTTTCAAGTTATTTCAACAAAAAATTGATTGAACCTTACCATTGAATTATTAACAGGAAAAGTGGAGATTTTTATTCTGCCAAGAAGACAGAGTGATACTATGCAGAGACTGTGATATGTCAATACACAAAGCAAATGAAAACACAATGAAGCACAGTAGATTTCTAATAGGTGGAAATAGGCTTTCCTCAGATCCAATAGCAGAGCCCGAACTAAGGCTCGAAACATCCAGTGAAAGCAATCATCACTGTAATTCTGGATTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009385243.1	3.8e-27	PREDICTED: B-box zinc finger protein 21-like
Swissprot	Q9LQZ7.1	1.4e-26	Protein SALT TOLERANCE HOMOLOG 2
trEMBL	A0A0D9VIV8	7.2e-28	B-box zinc finger protein 20

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G75540.1	60.87	6e-27	116	AtBBX21;BBX21;LHUS;STH2	salt tolerance homolog2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06255	AT1G75540.1	92	34	1	37	128	20	109	60.87	6e-27	116
AfisC4G06255	AT4G39070.1	98	39	1	37	134	20	113	56.12	5e-26	113
AfisC4G06255	AT1G06040.1	91	41	1	37	127	20	105	49.45	2e-20	95.1

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00270.26	DEAD	Domain	2	31	30.3	2.8e-07
PF00643.21	zf-B_box	Domain	75	117	29.0	8.1e-07

Gene Ontology

Accession	Ontology	Name
GO:0000184	P	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003713	F	transcription coactivator activity
GO:0016020	C	membrane
GO:0004004	F	ATP-dependent RNA helicase activity
GO:0005829	C	cytosol
GO:0005524	F	ATP binding
GO:0005654	C	nucleoplasm
GO:0005730	C	nucleolus
GO:0006364	P	rRNA processing
GO:0008270	F	zinc ion binding
GO:0009651	P	response to salt stress
GO:0010200	P	response to chitin
GO:0010501	P	RNA secondary structure unwinding
GO:0030331	F	estrogen receptor binding
GO:0033148	P	positive regulation of intracellular estrogen receptor signaling pathway
GO:0043565	F	sequence-specific DNA binding
GO:0043581	P	mycelium development
GO:0044822	F	poly(A) RNA binding
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0048573	P	photoperiodism, flowering
GO:0072358	P	cardiovascular system development
GO:0080167	P	response to karrikin
GO:0090351	P	seedling development
GO:1900458	P	negative regulation of brassinosteroid mediated signaling pathway
GO:1902448	P	positive regulation of shade avoidance
GO:2000306	P	positive regulation of photomorphogenesis
GO:2001014	P	regulation of skeletal muscle cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network