result

Gene information

Detail information of AfisC4G06268

Location

Gene	Chr	Start	End	Strand
AfisC4G06268	chr4	1159266220	1159268011	+

Sequences

CDS

>AfisC4G06268
ATGCCAACTATCAACTGGAGAATTTCTGATCCCAGTGATCAAAACCATAGCTTTATTCCTTTAAACCCAAGCACAAGAATGATGAATAGCATTTGGATCACCAGTAAGAAGAAGTATATCTTTAAAGTATCTGTTGCATTATTGATGATATTCGTCGTGTTTTCCACAATTGCCATATGTTACAAAGGTAGAAACAGAAGAAGACATGCAAAATTAGGGTACTTAAATGCAAAGCGCTCAACTTCTTCATGCTTATCGCCTGATATGCTGGCGGTTATGGCTAAATACTCTTTAAATAGTTATACTATAAAAGAATTAAACACTGCTACAAATAATTTTAGCAAGGAAATGAAGCTGGGTGCATCAGTTCATAAAGGAAGAATTGGTGACAGTGACTTGGTGATCAAGAAAATGGGATTTGGAGATGCAAGAAAAACAATCAGTATACACTCGAAGATCAATCATTCAAGCATAGTGAAATTAGATGGTGTTTGCTATGGAGATGATGAATTTTCTTCCTCATATTTGGTATTTGAGTATGCACGAAATGGGTCCTTGAGAAATTGCTTACAAAATAAAATGGAAGTTCTAACATGGCAAAAGAGGGCACAGATTGCTTTAGATGTTGCAATGGGTCTGCAGTATATACATCATTGCACAACCCCATCTTACATTCATATGAACATCAGTAGTAAGAATATATTGCTCACGGAGGAACATAGAGCAAAAATTGCGAATTTGGGTTCAGGCAATGATGTTATTGCTTCAGAAGGGTGGGTTGCACCAGAATACATTCGTTATGGATTTGTATCGACAAAGGTTGATGTTTTTGCCTTTGGGGTTGTCCTATTTGAGATTTTGTCAGCAAAAGAAGTCAGAGATAAAAACATCATTGAAAGATTGTGTTTTTCGAATGGCGAAGGAGGTGGTTTAAATGGTTGCTTTGATGAGCTTAAAATGTTAATAGATCCAAATCTTTATGATTACCCAATTGGAGATGCTCTGTGTATGACTGTCTTGGCTAAATGTTGCCTAGATGAAAATCCTATGCATCGTCCCTCTATGAATGACGTAATGAAGGTTCTATCTAGAATGGTAAGCTGA

Protein

Gene

>AfisC4G06268
CAGGCAATTCTATGACCCAACTGATTGTTCTTCTCCTAAATTCTCTCCGGGTTCACTATACACGTGCAATGCTACTCGCCCTTCTTGCAAAACATACATAGTCTACAGATCACAAGAAGGTTTTAACAGTATATCAAAGATTTCAGAACTCTTCGGTATAAACAAAAATAAGGTATTGTTACTGAACAACATATCAAACCCATTTCAAACACTCGATGAAAACCGAGAAGTTCTTCTCCCAGCCACTTGCTTTTGCTCAAATGGATATTTCCGTTCTAATATTAGCTATACAGTTCCTTCAACCACGACATATGCTGAAATTGCTTGTAATGTTTTTTGAAGGCTTGGTGAAATTGGTTACACTAGCCAAGGAAAACTCCTATCATCCTTTCAATCTTGATAAAGGGCTAGAGATACACGTGCCATTAAAATGTGCATGCCCTGATATAAATGATACTATGTATGGATATGAATATCTTGTCTCTTATCCGATTCAAGAACGAGATACCACAAACTTAGTAGCTAAAAAGTTCAATATAACTCCTGAAGAGTTGATAGCTCAAAACAGTCAAGGTGCATATGCGACTGTGATATCCAATACTACAATTTTAGTCCCTGTAAAAAACCATGCCAACTATCAACTGGAGAATTTCTGATCCCAGTGATCAAAACCATAGCTTTATTCCTTTAAACCCAAGCACAAGAATGATGAATAGCATTTGGATCACCAGTAAGAAGAAGTATATCTTTAAAGTATCTGTTGCATTATTGATGATATTCGTCGTGTTTTCCACAATTGCCATATGTTACAAAGGTAGAAACAGAAGAAGACATGCAAAATTAGGGTACTTAAATGCAAAGCGCTCAACTTCTTCATGCTTATCGCCTGATATGCTGGCGGTTATGGCTAAATACTCTTTAAATAGTTATACTATAAAAGAATTAAACACTGCTACAAATAATTTTAGCAAGGAAATGAAGCTGGGTGCATCAGTTCATAAAGGAAGAATTGGTGACAGTGACTTGGTGATCAAGAAAATGGGATTTGGAGATGCAAGAAAAACAATCAGTATACACTCGAAGATCAATCATTCAAGCATAGTGAAATTAGATGGTGTTTGCTATGGAGATGATGAATTTTCTTCCTCATATTTGGTATTTGAGTATGCACGAAATGGGTCCTTGAGAAATTGCTTACAAAATAAAATGGAAGTTCTAACATGGCAAAAGAGGGCACAGATTGCTTTAGATGTTGCAATGGGTCTGCAGTATATACATCATTGCACAACCCCATCTTACATTCATATGAACATCAGTAGTAAGAATATATTGCTCACGGAGGAACATAGAGCAAAAATTGCGAATTTGGGTTCAGGCAATGATGTTATTGCTTCAGAAGGGTGGGTTGCACCAGAATACATTCGTTATGGATTTGTATCGACAAAGGTTGATGTTTTTGCCTTTGGGGTTGTCCTATTTGAGATTTTGTCAGCAAAAGAAGTCAGAGATAAAAACATCATTGAAAGATTGTGTTTTTCGAATGGCGAAGGAGGTGGTTTAAATGGTTGCTTTGATGAGCTTAAAATGTTAATAGATCCAAATCTTTATGATTACCCAATTGGAGATGCTCTGTGTATGACTGTCTTGGCTAAATGTTGCCTAGATGAAAATCCTATGCATCGTCCCTCTATGAATGACGTAATGAAGGTTCTATCTAGAATGGTAAGCTGATGTTGAATTTGATATGTTTGTTAAAAGATGAACGAAAAATGTGTACCTTATTCTTGCTTTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020249435.1	9.8e-122	lysM domain receptor-like kinase 4
Swissprot	O22808.1	1.2e-44	LysM-containing receptor-like kinase 5
trEMBL	A0A5P1E3H9	7.1e-122	Protein LYK5-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G33580.1	37.76	3e-45	179	LYK5	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC4G06268	AT2G33580.1	294	156	7	97	367	356	645	37.76	3e-45	179
AfisC4G06268	AT3G21630.1	399	208	14	13	367	214	595	32.58	1e-43	174
AfisC4G06268	AT2G23770.1	291	158	7	88	367	331	602	35.40	1e-39	160

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	145	360	99.4	1.8e-28

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0002221	P	pattern recognition receptor signaling pathway
GO:0002831	P	regulation of response to biotic stimulus
GO:0050832	P	defense response to fungus
GO:0004674	F	protein serine/threonine kinase activity
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006468	P	protein phosphorylation
GO:0007166	P	cell surface receptor signaling pathway
GO:0008061	F	chitin binding
GO:0009593	P	detection of chemical stimulus
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0044403	P	symbiosis, encompassing mutualism through parasitism
GO:0032101	P	regulation of response to external stimulus
GO:0042803	F	protein homodimerization activity
GO:0043167	F	ion binding
GO:0044249	P	cellular biosynthetic process
GO:0044444	C	cytoplasmic part
GO:0044446	C	intracellular organelle part
GO:0044710	P	single-organism metabolic process
GO:0044763	P	single-organism cellular process
GO:0048364	P	root development
GO:0071219	P	cellular response to molecule of bacterial origin
GO:0071323	P	cellular response to chitin
GO:0098581	P	detection of external biotic stimulus
GO:1901576	P	organic substance biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network