Detail information of AfisC4G07232
| Gene | Chr | Start | End | Strand |
|---|---|---|---|---|
| AfisC4G07232 | chr4 | 1366282975 | 1366321645 | - |
| CDS |
| Protein |
| Gene |
| Database | accession number | e-value | annotation |
|---|---|---|---|
| nr | XP_020242367.1 | 0.0e+00 | CHD3-type chromatin-remodeling factor PICKLE |
| Swissprot | Q9S775.1 | 0.0e+00 | Protein GYMNOS |
| trEMBL | A0A8K0HU29 | 0.0e+00 | CHD3-type chromatin-remodeling factor PICKLE |
| TAIR id | % identity | e-value | bit score | gene aliases | Short description |
|---|---|---|---|---|---|
| AT2G25170.1 | 59.67 | 0.0 | 1536 | CHD3;CHR6;CKH2;EPP1;GYM;PKL;SSL2 | chromatin remodeling factor CHD3 (PICKLE) |
| Species | Genes |
|---|---|
| - | - |
| Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
|---|---|---|---|---|---|---|
| PF00628.26 | PHD | Domain | 56 | 98 | 31.7 | 9.6e-08 |
| PF00385.21 | Chromo | Domain | 104 | 157 | 35.1 | 8e-09 |
| PF00385.21 | Chromo | Domain | 194 | 241 | 46.6 | 2.1e-12 |
| PF00176.20 | SNF2_N | Family | 308 | 587 | 208.1 | 1.4e-61 |
| PF00271.28 | Helicase_C | Family | 613 | 726 | 62.0 | 5.3e-17 |
| PF06465.10 | DUF1087 | Domain | 852 | 910 | 77.6 | 5.1e-22 |
| PF06461.8 | DUF1086 | Domain | 946 | 1077 | 169.0 | 4.3e-50 |
| Accession | Ontology | Name |
|---|---|---|
| GO:0000122 | P | negative regulation of transcription from RNA polymerase II promoter |
| GO:0000166 | F | nucleotide binding |
| GO:0000790 | C | nuclear chromatin |
| GO:0000792 | C | heterochromatin |
| GO:0000978 | F | RNA polymerase II core promoter proximal region sequence-specific DNA binding |
| GO:0000980 | F | RNA polymerase II distal enhancer sequence-specific DNA binding |
| GO:0001103 | F | RNA polymerase II repressing transcription factor binding |
| GO:0001221 | F | transcription cofactor binding |
| GO:0003678 | F | DNA helicase activity |
| GO:0016020 | C | membrane |
| GO:0046872 | F | metal ion binding |
| GO:0005737 | C | cytoplasm |
| GO:0005665 | C | DNA-directed RNA polymerase II, core complex |
| GO:0005700 | C | polytene chromosome |
| GO:0005730 | C | nucleolus |
| GO:0005813 | C | centrosome |
| GO:0007051 | P | spindle organization |
| GO:0008026 | F | ATP-dependent helicase activity |
| GO:0008094 | F | DNA-dependent ATPase activity |
| GO:0008285 | P | negative regulation of cell proliferation |
| GO:0009733 | P | response to auxin |
| GO:0009736 | P | cytokinin-activated signaling pathway |
| GO:0009739 | P | response to gibberellin |
| GO:0009788 | P | negative regulation of abscisic acid-activated signaling pathway |
| GO:0016581 | C | NuRD complex |
| GO:0021895 | P | cerebral cortex neuron differentiation |
| GO:0031492 | F | nucleosomal DNA binding |
| GO:0032993 | C | protein-DNA complex |
| GO:0035093 | P | spermatogenesis, exchange of chromosomal proteins |
| GO:0036091 | P | positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress |
| GO:0040027 | P | negative regulation of vulval development |
| GO:0042826 | F | histone deacetylase binding |
| GO:0043967 | P | histone H4 acetylation |
| GO:0044822 | F | poly(A) RNA binding |
| GO:0045111 | C | intermediate filament cytoskeleton |
| GO:0045595 | P | regulation of cell differentiation |
| GO:0048557 | P | embryonic digestive tract morphogenesis |
| GO:0051297 | P | centrosome organization |
| GO:0060850 | P | regulation of transcription involved in cell fate commitment |
| GO:0061628 | F | H3K27me3 modified histone binding |
| GO:0070925 | P | organelle assembly |
| GO:0090571 | C | RNA polymerase II transcription repressor complex |
| GO:0098532 | P | histone H3-K27 trimethylation |
| GO:0098687 | C | chromosomal region |
| GO:1901798 | P | positive regulation of signal transduction by p53 class mediator |
| GO:2000023 | P | regulation of lateral root development |
| KO | Name | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K11643 | CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4 | EC:3.6.4.12 | - | - |